miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13415 5' -43.3 NC_003409.1 + 91623 1.13 0.029367
Target:  5'- cCCAACCGCCUAGGAAAAAAAUAACCAc -3'
miRNA:   3'- -GGUUGGCGGAUCCUUUUUUUAUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 107687 0.77 0.977076
Target:  5'- aCGGCCGCC--GGAAGGGGcgAACCAc -3'
miRNA:   3'- gGUUGGCGGauCCUUUUUUuaUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 98971 0.76 0.979373
Target:  5'- uCCAACUGCC-AGGAAGAAAcacuucgGUGugCAa -3'
miRNA:   3'- -GGUUGGCGGaUCCUUUUUU-------UAUugGU- -5'
13415 5' -43.3 NC_003409.1 + 79772 0.75 0.99071
Target:  5'- gCCGGCCGCCaAGGAAccccgaGGCCAc -3'
miRNA:   3'- -GGUUGGCGGaUCCUUuuuuuaUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 60293 0.73 0.997468
Target:  5'- gCCGcagcGCCGCCUGGcGAAAguuAAAAaGACCGa -3'
miRNA:   3'- -GGU----UGGCGGAUC-CUUU---UUUUaUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 15728 0.72 0.999039
Target:  5'- gCCGACCGCCacgAGGAAcccaugcAAucGUGACUg -3'
miRNA:   3'- -GGUUGGCGGa--UCCUU-------UUuuUAUUGGu -5'
13415 5' -43.3 NC_003409.1 + 85652 0.72 0.999059
Target:  5'- cCCAACUGCCU-GGAGAAuuuu--CCAc -3'
miRNA:   3'- -GGUUGGCGGAuCCUUUUuuuauuGGU- -5'
13415 5' -43.3 NC_003409.1 + 96977 0.72 0.999394
Target:  5'- cCCGGCCGCCUuGGccu-GGAUaAACCGa -3'
miRNA:   3'- -GGUUGGCGGAuCCuuuuUUUA-UUGGU- -5'
13415 5' -43.3 NC_003409.1 + 128192 0.72 0.999394
Target:  5'- cCCAACCgcGCCaAGGAGGGc--UAGCCAg -3'
miRNA:   3'- -GGUUGG--CGGaUCCUUUUuuuAUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 55907 0.71 0.999519
Target:  5'- gCCGugCGCCUAgaugcgcuGGAAGAGAAUggagaggaGACCc -3'
miRNA:   3'- -GGUugGCGGAU--------CCUUUUUUUA--------UUGGu -5'
13415 5' -43.3 NC_003409.1 + 13172 0.71 0.999696
Target:  5'- gCUAACCGCgUcuccuuuugggacGGGGAGAAuGUAACCu -3'
miRNA:   3'- -GGUUGGCGgA-------------UCCUUUUUuUAUUGGu -5'
13415 5' -43.3 NC_003409.1 + 74738 0.71 0.99977
Target:  5'- -aAACUGCCUGGGAAGu---UAACgCAg -3'
miRNA:   3'- ggUUGGCGGAUCCUUUuuuuAUUG-GU- -5'
13415 5' -43.3 NC_003409.1 + 23639 0.7 0.999822
Target:  5'- gCCAAUCaGCUUGGGAGuucuAGGGAUAgggGCCAa -3'
miRNA:   3'- -GGUUGG-CGGAUCCUU----UUUUUAU---UGGU- -5'
13415 5' -43.3 NC_003409.1 + 70730 0.7 0.999822
Target:  5'- cCCAcCCGCCcaUGGGcAGAGGcAGUGACCu -3'
miRNA:   3'- -GGUuGGCGG--AUCC-UUUUU-UUAUUGGu -5'
13415 5' -43.3 NC_003409.1 + 119371 0.7 0.999822
Target:  5'- gCCAAUCaGCUUGGGAGuucuAGGGAUAgggGCCAa -3'
miRNA:   3'- -GGUUGG-CGGAUCCUU----UUUUUAU---UGGU- -5'
13415 5' -43.3 NC_003409.1 + 127185 0.7 0.999864
Target:  5'- aCAACCGCgaAGGAAGcauGUcGCCGa -3'
miRNA:   3'- gGUUGGCGgaUCCUUUuuuUAuUGGU- -5'
13415 5' -43.3 NC_003409.1 + 33267 0.7 0.99992
Target:  5'- gCCAGCUGCgCUucGGAcggagccGGAAGAUAACCc -3'
miRNA:   3'- -GGUUGGCG-GAu-CCU-------UUUUUUAUUGGu -5'
13415 5' -43.3 NC_003409.1 + 120668 0.7 0.999923
Target:  5'- cCCGACCGCCgauGGAuu-AGGUGcuGCUg -3'
miRNA:   3'- -GGUUGGCGGau-CCUuuuUUUAU--UGGu -5'
13415 5' -43.3 NC_003409.1 + 59617 0.69 0.999942
Target:  5'- aCAACCGCCUuGGAAAugcu--GCUg -3'
miRNA:   3'- gGUUGGCGGAuCCUUUuuuuauUGGu -5'
13415 5' -43.3 NC_003409.1 + 43812 0.69 0.999949
Target:  5'- cCCGcaucGCCGCCUcucucgucaagauagGGGAuAAGuuuGUGGCCAu -3'
miRNA:   3'- -GGU----UGGCGGA---------------UCCUuUUUu--UAUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.