miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13415 5' -43.3 NC_003409.1 + 4571 0.66 1
Target:  5'- gCCAGgUGCUggAGGGuguAAGAUGACCc -3'
miRNA:   3'- -GGUUgGCGGa-UCCUuu-UUUUAUUGGu -5'
13415 5' -43.3 NC_003409.1 + 6291 0.69 0.999958
Target:  5'- aCCAGCCuGUCUaccAGGggGGucAUAAUCAc -3'
miRNA:   3'- -GGUUGG-CGGA---UCCuuUUuuUAUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 9988 0.66 1
Target:  5'- gCCAGCCGCa---GAAAGAGAcggucAGCCAg -3'
miRNA:   3'- -GGUUGGCGgaucCUUUUUUUa----UUGGU- -5'
13415 5' -43.3 NC_003409.1 + 11432 0.67 0.999998
Target:  5'- gCCAACUGuccCCUcGGAGAcaAGAGUAugCAg -3'
miRNA:   3'- -GGUUGGC---GGAuCCUUU--UUUUAUugGU- -5'
13415 5' -43.3 NC_003409.1 + 11679 0.68 0.999994
Target:  5'- gCCGACCGCUgcgAGGAcgu-----GCCAu -3'
miRNA:   3'- -GGUUGGCGGa--UCCUuuuuuuauUGGU- -5'
13415 5' -43.3 NC_003409.1 + 13172 0.71 0.999696
Target:  5'- gCUAACCGCgUcuccuuuugggacGGGGAGAAuGUAACCu -3'
miRNA:   3'- -GGUUGGCGgA-------------UCCUUUUUuUAUUGGu -5'
13415 5' -43.3 NC_003409.1 + 15728 0.72 0.999039
Target:  5'- gCCGACCGCCacgAGGAAcccaugcAAucGUGACUg -3'
miRNA:   3'- -GGUUGGCGGa--UCCUU-------UUuuUAUUGGu -5'
13415 5' -43.3 NC_003409.1 + 16488 0.69 0.999958
Target:  5'- aCGcCCGUCUGGGGGcuc-GUGACCAc -3'
miRNA:   3'- gGUuGGCGGAUCCUUuuuuUAUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 23639 0.7 0.999822
Target:  5'- gCCAAUCaGCUUGGGAGuucuAGGGAUAgggGCCAa -3'
miRNA:   3'- -GGUUGG-CGGAUCCUU----UUUUUAU---UGGU- -5'
13415 5' -43.3 NC_003409.1 + 25533 0.69 0.999977
Target:  5'- uUCAAgaGCCUAugcuGGGAcAGAAUAGCCGg -3'
miRNA:   3'- -GGUUggCGGAU----CCUUuUUUUAUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 32005 0.67 0.999998
Target:  5'- -gGACCG-CUGGGAGucuGGGAUAACUc -3'
miRNA:   3'- ggUUGGCgGAUCCUUu--UUUUAUUGGu -5'
13415 5' -43.3 NC_003409.1 + 33267 0.7 0.99992
Target:  5'- gCCAGCUGCgCUucGGAcggagccGGAAGAUAACCc -3'
miRNA:   3'- -GGUUGGCG-GAu-CCU-------UUUUUUAUUGGu -5'
13415 5' -43.3 NC_003409.1 + 35481 0.67 0.999998
Target:  5'- aCGACCuCCcugAGGAGAGGA--AACCAc -3'
miRNA:   3'- gGUUGGcGGa--UCCUUUUUUuaUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 36595 0.67 0.999998
Target:  5'- aCC-ACUGCUgGGGAGAGGAGauGCCu -3'
miRNA:   3'- -GGuUGGCGGaUCCUUUUUUUauUGGu -5'
13415 5' -43.3 NC_003409.1 + 37526 0.69 0.999984
Target:  5'- aCAACUGUCUuguuGGGGAAAAAAaGACUu -3'
miRNA:   3'- gGUUGGCGGA----UCCUUUUUUUaUUGGu -5'
13415 5' -43.3 NC_003409.1 + 43812 0.69 0.999949
Target:  5'- cCCGcaucGCCGCCUcucucgucaagauagGGGAuAAGuuuGUGGCCAu -3'
miRNA:   3'- -GGU----UGGCGGA---------------UCCUuUUUu--UAUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 49207 0.66 1
Target:  5'- gCAGgCGCCUaugacuAGGAGGAAGAgcACUg -3'
miRNA:   3'- gGUUgGCGGA------UCCUUUUUUUauUGGu -5'
13415 5' -43.3 NC_003409.1 + 50643 0.66 1
Target:  5'- gUCAACCcCUUAGGGAGcAAGUggUCGc -3'
miRNA:   3'- -GGUUGGcGGAUCCUUUuUUUAuuGGU- -5'
13415 5' -43.3 NC_003409.1 + 54155 0.66 1
Target:  5'- aCAGCCGUUcagaaAGGAcGAAAGguUAACCAg -3'
miRNA:   3'- gGUUGGCGGa----UCCUuUUUUU--AUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 55907 0.71 0.999519
Target:  5'- gCCGugCGCCUAgaugcgcuGGAAGAGAAUggagaggaGACCc -3'
miRNA:   3'- -GGUugGCGGAU--------CCUUUUUUUA--------UUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.