Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13415 | 5' | -43.3 | NC_003409.1 | + | 91623 | 1.13 | 0.029367 |
Target: 5'- cCCAACCGCCUAGGAAAAAAAUAACCAc -3' miRNA: 3'- -GGUUGGCGGAUCCUUUUUUUAUUGGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 78115 | 0.66 | 1 |
Target: 5'- aCCAACCGUucaugauauauCUAGGAGugGA--GACCc -3' miRNA: 3'- -GGUUGGCG-----------GAUCCUUuuUUuaUUGGu -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 9988 | 0.66 | 1 |
Target: 5'- gCCAGCCGCa---GAAAGAGAcggucAGCCAg -3' miRNA: 3'- -GGUUGGCGgaucCUUUUUUUa----UUGGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 54155 | 0.66 | 1 |
Target: 5'- aCAGCCGUUcagaaAGGAcGAAAGguUAACCAg -3' miRNA: 3'- gGUUGGCGGa----UCCUuUUUUU--AUUGGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 55907 | 0.71 | 0.999519 |
Target: 5'- gCCGugCGCCUAgaugcgcuGGAAGAGAAUggagaggaGACCc -3' miRNA: 3'- -GGUugGCGGAU--------CCUUUUUUUA--------UUGGu -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 119371 | 0.7 | 0.999822 |
Target: 5'- gCCAAUCaGCUUGGGAGuucuAGGGAUAgggGCCAa -3' miRNA: 3'- -GGUUGG-CGGAUCCUU----UUUUUAU---UGGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 43812 | 0.69 | 0.999949 |
Target: 5'- cCCGcaucGCCGCCUcucucgucaagauagGGGAuAAGuuuGUGGCCAu -3' miRNA: 3'- -GGU----UGGCGGA---------------UCCUuUUUu--UAUUGGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 16488 | 0.69 | 0.999958 |
Target: 5'- aCGcCCGUCUGGGGGcuc-GUGACCAc -3' miRNA: 3'- gGUuGGCGGAUCCUUuuuuUAUUGGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 11679 | 0.68 | 0.999994 |
Target: 5'- gCCGACCGCUgcgAGGAcgu-----GCCAu -3' miRNA: 3'- -GGUUGGCGGa--UCCUuuuuuuauUGGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 35481 | 0.67 | 0.999998 |
Target: 5'- aCGACCuCCcugAGGAGAGGA--AACCAc -3' miRNA: 3'- gGUUGGcGGa--UCCUUUUUUuaUUGGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 108738 | 0.68 | 0.999989 |
Target: 5'- cCCAGCUagcugGCCUgcAGGAAAAGc-UGGCCGa -3' miRNA: 3'- -GGUUGG-----CGGA--UCCUUUUUuuAUUGGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 15728 | 0.72 | 0.999039 |
Target: 5'- gCCGACCGCCacgAGGAAcccaugcAAucGUGACUg -3' miRNA: 3'- -GGUUGGCGGa--UCCUU-------UUuuUAUUGGu -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 11432 | 0.67 | 0.999998 |
Target: 5'- gCCAACUGuccCCUcGGAGAcaAGAGUAugCAg -3' miRNA: 3'- -GGUUGGC---GGAuCCUUU--UUUUAUugGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 85652 | 0.72 | 0.999059 |
Target: 5'- cCCAACUGCCU-GGAGAAuuuu--CCAc -3' miRNA: 3'- -GGUUGGCGGAuCCUUUUuuuauuGGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 82865 | 0.69 | 0.999982 |
Target: 5'- aCCAGCCGCCauaaucaagcguacUGGGu---GAGUuGCCGu -3' miRNA: 3'- -GGUUGGCGG--------------AUCCuuuuUUUAuUGGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 32005 | 0.67 | 0.999998 |
Target: 5'- -gGACCG-CUGGGAGucuGGGAUAACUc -3' miRNA: 3'- ggUUGGCgGAUCCUUu--UUUUAUUGGu -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 50643 | 0.66 | 1 |
Target: 5'- gUCAACCcCUUAGGGAGcAAGUggUCGc -3' miRNA: 3'- -GGUUGGcGGAUCCUUUuUUUAuuGGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 96977 | 0.72 | 0.999394 |
Target: 5'- cCCGGCCGCCUuGGccu-GGAUaAACCGa -3' miRNA: 3'- -GGUUGGCGGAuCCuuuuUUUA-UUGGU- -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 120668 | 0.7 | 0.999923 |
Target: 5'- cCCGACCGCCgauGGAuu-AGGUGcuGCUg -3' miRNA: 3'- -GGUUGGCGGau-CCUuuuUUUAU--UGGu -5' |
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13415 | 5' | -43.3 | NC_003409.1 | + | 132570 | 0.68 | 0.999996 |
Target: 5'- gCCAACCGUCgaguGGc--GAAGUAACUg -3' miRNA: 3'- -GGUUGGCGGau--CCuuuUUUUAUUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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