Results 21 - 26 of 26 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1342 | 3' | -56.3 | NC_001335.1 | + | 21262 | 0.69 | 0.435333 |
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Target: 5'- uUGugGAaguGCGGCuuucGGCaCGUCGaCUGGCu -3' miRNA: 3'- uACugCU---UGUCGu---CCG-GCAGC-GACUG- -5' |
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| 1342 | 3' | -56.3 | NC_001335.1 | + | 50181 | 0.69 | 0.435333 |
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Target: 5'- uUGGC--ACAGaAGGCCGUCGCguccgGGCa -3' miRNA: 3'- uACUGcuUGUCgUCCGGCAGCGa----CUG- -5' |
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| 1342 | 3' | -56.3 | NC_001335.1 | + | 19432 | 0.7 | 0.36147 |
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Target: 5'- gAUGGCGAcuuccGCcuGCGcGGCCugGUCGCUGGCg -3' miRNA: 3'- -UACUGCU-----UGu-CGU-CCGG--CAGCGACUG- -5' |
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| 1342 | 3' | -56.3 | NC_001335.1 | + | 42159 | 0.71 | 0.336111 |
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Target: 5'- cAUGGCuuccuuucaGAACGGCGGGCCGUacaGCUcGAUc -3' miRNA: 3'- -UACUG---------CUUGUCGUCCGGCAg--CGA-CUG- -5' |
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| 1342 | 3' | -56.3 | NC_001335.1 | + | 50219 | 0.71 | 0.319939 |
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Target: 5'- uUGAcCGGAgGGCAGGCCGaugcUGUUGGCg -3' miRNA: 3'- uACU-GCUUgUCGUCCGGCa---GCGACUG- -5' |
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| 1342 | 3' | -56.3 | NC_001335.1 | + | 36684 | 0.72 | 0.289366 |
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Target: 5'- -gGGCGAACugguGCAGGuaGUCGaCUGGCc -3' miRNA: 3'- uaCUGCUUGu---CGUCCggCAGC-GACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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