miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13422 3' -55.8 NC_003409.1 + 99755 0.66 0.890074
Target:  5'- aGAGCaugaauGCcuGUAUUGGU-UGGCGCGGg -3'
miRNA:   3'- aCUCG------CGu-CAUAACCGcACCGCGUCg -5'
13422 3' -55.8 NC_003409.1 + 105770 0.66 0.890074
Target:  5'- gUGGGUGCAu--UUGGa-UGGgGCAGCu -3'
miRNA:   3'- -ACUCGCGUcauAACCgcACCgCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 123166 0.66 0.875855
Target:  5'- uUGAGa--AGU--UGGCGUGGCGaacagaGGCa -3'
miRNA:   3'- -ACUCgcgUCAuaACCGCACCGCg-----UCG- -5'
13422 3' -55.8 NC_003409.1 + 26857 0.66 0.868404
Target:  5'- aGAGCGCGGgggUGGaCG-GGCacgaAGCg -3'
miRNA:   3'- aCUCGCGUCauaACC-GCaCCGcg--UCG- -5'
13422 3' -55.8 NC_003409.1 + 133035 0.66 0.860733
Target:  5'- gUGuuUGCGGUggUGGCagagucgGGCGCGGUg -3'
miRNA:   3'- -ACucGCGUCAuaACCGca-----CCGCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 35366 0.66 0.860733
Target:  5'- gGAGCGgAcuc--GGUGgGGCGCGGCg -3'
miRNA:   3'- aCUCGCgUcauaaCCGCaCCGCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 11113 0.67 0.852848
Target:  5'- -cGGCGCcugggcuauGGUAUUGGUGcGGCGacugAGCa -3'
miRNA:   3'- acUCGCG---------UCAUAACCGCaCCGCg---UCG- -5'
13422 3' -55.8 NC_003409.1 + 115626 0.67 0.844755
Target:  5'- cGGGUGCGGUggUGGUGUcuGUaaucugGCAGCa -3'
miRNA:   3'- aCUCGCGUCAuaACCGCAc-CG------CGUCG- -5'
13422 3' -55.8 NC_003409.1 + 131258 0.67 0.841461
Target:  5'- -cGGCGCGGgga-GGUGgggcacgaaaacaGGCGCAGCu -3'
miRNA:   3'- acUCGCGUCauaaCCGCa------------CCGCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 113583 0.67 0.819306
Target:  5'- -uGGCGCAggcgaucgccGUGUUGcGCGUGGCuCAGa -3'
miRNA:   3'- acUCGCGU----------CAUAAC-CGCACCGcGUCg -5'
13422 3' -55.8 NC_003409.1 + 51601 0.67 0.819306
Target:  5'- cGGGCuccaGgGGUA-UGGCGUGaUGCAGCa -3'
miRNA:   3'- aCUCG----CgUCAUaACCGCACcGCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 52152 0.67 0.819306
Target:  5'- cGGGgGguGgccugUGGCGUGuGCGC-GCu -3'
miRNA:   3'- aCUCgCguCaua--ACCGCAC-CGCGuCG- -5'
13422 3' -55.8 NC_003409.1 + 74254 0.67 0.81046
Target:  5'- -aGGUGUcGUGgucgaUGGCGUGGUGuCGGCu -3'
miRNA:   3'- acUCGCGuCAUa----ACCGCACCGC-GUCG- -5'
13422 3' -55.8 NC_003409.1 + 80417 0.68 0.801445
Target:  5'- cGAGCGguGcguuUAUUGGUGcGG-GCAGUc -3'
miRNA:   3'- aCUCGCguC----AUAACCGCaCCgCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 50062 0.68 0.782948
Target:  5'- -aGGCGUccGGUAcUGGCGUgGGCGCcGUu -3'
miRNA:   3'- acUCGCG--UCAUaACCGCA-CCGCGuCG- -5'
13422 3' -55.8 NC_003409.1 + 93665 0.68 0.782948
Target:  5'- cUGGGCGguGgGUU-GUGUGG-GCGGCg -3'
miRNA:   3'- -ACUCGCguCaUAAcCGCACCgCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 41990 0.68 0.782948
Target:  5'- gUGAGCGa-----UGGCacGGCGCAGCg -3'
miRNA:   3'- -ACUCGCgucauaACCGcaCCGCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 87167 0.68 0.782948
Target:  5'- gUGGGUGguGcgccGGCGgagGGCGUGGCc -3'
miRNA:   3'- -ACUCGCguCauaaCCGCa--CCGCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 131053 0.68 0.779179
Target:  5'- -cAGCGcCAGgacccauccccUGGCGcUGGCGUAGCu -3'
miRNA:   3'- acUCGC-GUCaua--------ACCGC-ACCGCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 114978 0.68 0.773485
Target:  5'- aGAGaCGCGGgggugGGUGUGGaGCAGg -3'
miRNA:   3'- aCUC-GCGUCauaa-CCGCACCgCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.