miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13422 5' -50.1 NC_003409.1 + 34513 0.66 0.995243
Target:  5'- uGCGCGGCGAGcucauGCCcacccUGUACa -3'
miRNA:   3'- -CGCGUCGCUCcau--CGGuuuuuGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 54662 0.66 0.995243
Target:  5'- gGUGacCAGU-AGGUAcGUCAAGGGCGUACa -3'
miRNA:   3'- -CGC--GUCGcUCCAU-CGGUUUUUGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 8813 0.66 0.995243
Target:  5'- uUGCAG-GuGGUGGUaCAGAAggGCGUACa -3'
miRNA:   3'- cGCGUCgCuCCAUCG-GUUUU--UGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 77980 0.66 0.995243
Target:  5'- aGCGCAGCuaGGGGUucGCguGAAGUGUAUu -3'
miRNA:   3'- -CGCGUCG--CUCCAu-CGguUUUUGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 61602 0.66 0.995243
Target:  5'- -gGCAcucCGGGGUGGaaagguCCAAGAGCGUAUc -3'
miRNA:   3'- cgCGUc--GCUCCAUC------GGUUUUUGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 82621 0.66 0.995243
Target:  5'- gGCGUcGCGuGGUcugcGCCGAGGACGc-- -3'
miRNA:   3'- -CGCGuCGCuCCAu---CGGUUUUUGCaug -5'
13422 5' -50.1 NC_003409.1 + 94019 0.66 0.992537
Target:  5'- cGUGUAGCGAGGcaucuuuuUAGgCAAAAGCcacgACa -3'
miRNA:   3'- -CGCGUCGCUCC--------AUCgGUUUUUGca--UG- -5'
13422 5' -50.1 NC_003409.1 + 43092 0.66 0.991402
Target:  5'- aGCgGCGGCGAGGgcGgucuCCAGAAACu--- -3'
miRNA:   3'- -CG-CGUCGCUCCauC----GGUUUUUGcaug -5'
13422 5' -50.1 NC_003409.1 + 71733 0.66 0.991402
Target:  5'- gGCGguGCuuuucAGGagAGUUAGGGACGUGCu -3'
miRNA:   3'- -CGCguCGc----UCCa-UCGGUUUUUGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 16677 0.66 0.991402
Target:  5'- gGUGCGGUGGGGguaaGGCUGAAGcuCGUGg -3'
miRNA:   3'- -CGCGUCGCUCCa---UCGGUUUUu-GCAUg -5'
13422 5' -50.1 NC_003409.1 + 78290 0.67 0.990136
Target:  5'- gGCGCAGCccGGUAGCCGcauAUGc-- -3'
miRNA:   3'- -CGCGUCGcuCCAUCGGUuuuUGCaug -5'
13422 5' -50.1 NC_003409.1 + 132371 0.67 0.988727
Target:  5'- uGUGUAG-GAGGuUGGCCAugGACGg-- -3'
miRNA:   3'- -CGCGUCgCUCC-AUCGGUuuUUGCaug -5'
13422 5' -50.1 NC_003409.1 + 131705 0.67 0.988727
Target:  5'- gGUGCuGCG-GGcGGCCAGGGAC-UACc -3'
miRNA:   3'- -CGCGuCGCuCCaUCGGUUUUUGcAUG- -5'
13422 5' -50.1 NC_003409.1 + 42004 0.67 0.987167
Target:  5'- gGCGCAGCGAGaccAGCUcuc--CGUGCc -3'
miRNA:   3'- -CGCGUCGCUCca-UCGGuuuuuGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 68220 0.67 0.985446
Target:  5'- -gGUAGCaGuGGUAGCgGGccGCGUGCg -3'
miRNA:   3'- cgCGUCG-CuCCAUCGgUUuuUGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 15171 0.68 0.971202
Target:  5'- uCGCGGCGAGGUGGaucgcagcuguCCAGuuaccAGCGUcucGCg -3'
miRNA:   3'- cGCGUCGCUCCAUC-----------GGUUu----UUGCA---UG- -5'
13422 5' -50.1 NC_003409.1 + 107725 0.68 0.971202
Target:  5'- cGCuGguGCGAGcGcUGGCCGAcaagaucAGCGUGCa -3'
miRNA:   3'- -CG-CguCGCUC-C-AUCGGUUu------UUGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 114395 0.7 0.948959
Target:  5'- gGCGaCAGCGGGGUggggcuggcaaGGCCcccAAAGCGcgACa -3'
miRNA:   3'- -CGC-GUCGCUCCA-----------UCGGu--UUUUGCa-UG- -5'
13422 5' -50.1 NC_003409.1 + 96364 0.7 0.948959
Target:  5'- cGUGCacaaaAGCGuGGUGGaCCAAAAGgGUAUc -3'
miRNA:   3'- -CGCG-----UCGCuCCAUC-GGUUUUUgCAUG- -5'
13422 5' -50.1 NC_003409.1 + 121379 0.7 0.934427
Target:  5'- -gGCGGCGuuGUGGCCAcgGGCGg-- -3'
miRNA:   3'- cgCGUCGCucCAUCGGUuuUUGCaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.