miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13426 5' -53.3 NC_003409.1 + 103146 0.66 0.970623
Target:  5'- gGCGUGcGGacacugugcgUCUGGAAcAGCCuGCCUGa -3'
miRNA:   3'- -CGCGCuCCa---------AGACCUU-UUGG-CGGACg -5'
13426 5' -53.3 NC_003409.1 + 108519 0.66 0.970623
Target:  5'- uGCGCGuuaAGGggg-GGAAGGCCGCg-GUg -3'
miRNA:   3'- -CGCGC---UCCaagaCCUUUUGGCGgaCG- -5'
13426 5' -53.3 NC_003409.1 + 114401 0.66 0.970623
Target:  5'- -aGCGGGGUggggCUGGcAAGGCCcCCaaaGCg -3'
miRNA:   3'- cgCGCUCCAa---GACC-UUUUGGcGGa--CG- -5'
13426 5' -53.3 NC_003409.1 + 41548 0.66 0.970623
Target:  5'- cGCGCGuccguGGccgcguaucgUUGG-AAGCaCGCCUGCa -3'
miRNA:   3'- -CGCGCu----CCaa--------GACCuUUUG-GCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 113764 0.66 0.970327
Target:  5'- cGCGCGucGGgccgUUggugGGAAAACCGgcaccacCCUGUg -3'
miRNA:   3'- -CGCGCu-CCa---AGa---CCUUUUGGC-------GGACG- -5'
13426 5' -53.3 NC_003409.1 + 44954 0.66 0.967574
Target:  5'- cCGCGAG---CUuGAGAAgCGCCUGCu -3'
miRNA:   3'- cGCGCUCcaaGAcCUUUUgGCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 51921 0.66 0.967257
Target:  5'- gGCGCucGAGGcUCcgggaaccgugcgUGGAGAAagccuagacCCGCCUGUu -3'
miRNA:   3'- -CGCG--CUCCaAG-------------ACCUUUU---------GGCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 35181 0.66 0.963968
Target:  5'- -gGgGAgGGUUCUGGGgccggcuacuuagAAACCGCCa-- -3'
miRNA:   3'- cgCgCU-CCAAGACCU-------------UUUGGCGGacg -5'
13426 5' -53.3 NC_003409.1 + 46552 0.66 0.963283
Target:  5'- aCGCGGGG-UCUGGuauugaauggucguAGAGCaaaCGCuCUGCg -3'
miRNA:   3'- cGCGCUCCaAGACC--------------UUUUG---GCG-GACG- -5'
13426 5' -53.3 NC_003409.1 + 109743 0.66 0.963283
Target:  5'- cGCGCGGGGaaaaacagacgcgcUUCUGGcguggcGAAGuggcgcauguCCGCCgGCa -3'
miRNA:   3'- -CGCGCUCC--------------AAGACC------UUUU----------GGCGGaCG- -5'
13426 5' -53.3 NC_003409.1 + 7383 0.66 0.960816
Target:  5'- cUGC-AGGccgugUCUGGGAGcAUgGCCUGCa -3'
miRNA:   3'- cGCGcUCCa----AGACCUUU-UGgCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 79436 0.66 0.960816
Target:  5'- aGCGCcucGGUgacccUCUGGAAGGCUGUCcagaGCg -3'
miRNA:   3'- -CGCGcu-CCA-----AGACCUUUUGGCGGa---CG- -5'
13426 5' -53.3 NC_003409.1 + 12267 0.66 0.960816
Target:  5'- gGUGCGGGGggCcGGAuuGCUGCaCUcGUa -3'
miRNA:   3'- -CGCGCUCCaaGaCCUuuUGGCG-GA-CG- -5'
13426 5' -53.3 NC_003409.1 + 87661 0.66 0.960816
Target:  5'- cGCGCGuGGcUUCcccgccGGGAAACCggugccgaaggcGCUUGCg -3'
miRNA:   3'- -CGCGCuCC-AAGa-----CCUUUUGG------------CGGACG- -5'
13426 5' -53.3 NC_003409.1 + 25593 0.67 0.947645
Target:  5'- uGCGCGGGGggggggguguauacgCUGcGAAAACCuGCacggUGCa -3'
miRNA:   3'- -CGCGCUCCaa-------------GAC-CUUUUGG-CGg---ACG- -5'
13426 5' -53.3 NC_003409.1 + 111303 0.67 0.939837
Target:  5'- cGCGUGAGGUgaggUGGAcauggGAGgUGUCUGUg -3'
miRNA:   3'- -CGCGCUCCAag--ACCU-----UUUgGCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 83800 0.67 0.931837
Target:  5'- gGCGCGGGGUUUuuccauaauggauguUGGGu-GCCaCCUGg -3'
miRNA:   3'- -CGCGCUCCAAG---------------ACCUuuUGGcGGACg -5'
13426 5' -53.3 NC_003409.1 + 21515 0.68 0.924315
Target:  5'- gGCGCGGGGUgucGGAAGGCacaacucuaCUGCa -3'
miRNA:   3'- -CGCGCUCCAagaCCUUUUGgcg------GACG- -5'
13426 5' -53.3 NC_003409.1 + 97087 0.68 0.918643
Target:  5'- cCG-GAGGUUcCUGGAAGccACCGCugacaggauuCUGCg -3'
miRNA:   3'- cGCgCUCCAA-GACCUUU--UGGCG----------GACG- -5'
13426 5' -53.3 NC_003409.1 + 57495 0.68 0.916893
Target:  5'- gGUGUcAGGUUaCUGGAcGuggccagcguguacGCCGCCUGUu -3'
miRNA:   3'- -CGCGcUCCAA-GACCUuU--------------UGGCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.