miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13426 5' -53.3 NC_003409.1 + 118478 0.76 0.532924
Target:  5'- gGUGCGGGGUgc-GGggGACCGCgccgggguaCUGCa -3'
miRNA:   3'- -CGCGCUCCAagaCCuuUUGGCG---------GACG- -5'
13426 5' -53.3 NC_003409.1 + 118416 0.69 0.872119
Target:  5'- cGCGCcGGGUUcCUGG-GGugCGCC-GCg -3'
miRNA:   3'- -CGCGcUCCAA-GACCuUUugGCGGaCG- -5'
13426 5' -53.3 NC_003409.1 + 118370 0.69 0.872119
Target:  5'- cGCGCcGGGUUcCUGG-GGugCGCC-GCg -3'
miRNA:   3'- -CGCGcUCCAA-GACCuUUugGCGGaCG- -5'
13426 5' -53.3 NC_003409.1 + 118324 0.69 0.872119
Target:  5'- cGCGCcGGGUUcCUGG-GGugCGCC-GCg -3'
miRNA:   3'- -CGCGcUCCAA-GACCuUUugGCGGaCG- -5'
13426 5' -53.3 NC_003409.1 + 115957 0.69 0.8866
Target:  5'- aGCGCcuuGGGUgccUCUGGGuguGCCGCaagGCa -3'
miRNA:   3'- -CGCGc--UCCA---AGACCUuu-UGGCGga-CG- -5'
13426 5' -53.3 NC_003409.1 + 114401 0.66 0.970623
Target:  5'- -aGCGGGGUggggCUGGcAAGGCCcCCaaaGCg -3'
miRNA:   3'- cgCGCUCCAa---GACC-UUUUGGcGGa--CG- -5'
13426 5' -53.3 NC_003409.1 + 113764 0.66 0.970327
Target:  5'- cGCGCGucGGgccgUUggugGGAAAACCGgcaccacCCUGUg -3'
miRNA:   3'- -CGCGCu-CCa---AGa---CCUUUUGGC-------GGACG- -5'
13426 5' -53.3 NC_003409.1 + 111514 0.73 0.688238
Target:  5'- cGCGCGGGGUUucCUGGAcacGCCcUCUGUa -3'
miRNA:   3'- -CGCGCUCCAA--GACCUuu-UGGcGGACG- -5'
13426 5' -53.3 NC_003409.1 + 111303 0.67 0.939837
Target:  5'- cGCGUGAGGUgaggUGGAcauggGAGgUGUCUGUg -3'
miRNA:   3'- -CGCGCUCCAag--ACCU-----UUUgGCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 109743 0.66 0.963283
Target:  5'- cGCGCGGGGaaaaacagacgcgcUUCUGGcguggcGAAGuggcgcauguCCGCCgGCa -3'
miRNA:   3'- -CGCGCUCC--------------AAGACC------UUUU----------GGCGGaCG- -5'
13426 5' -53.3 NC_003409.1 + 109135 0.7 0.843828
Target:  5'- cGCGUGGGGUcgaaugugggaagugUCaGGAgccacugucccgGAGCCGgCUGCg -3'
miRNA:   3'- -CGCGCUCCA---------------AGaCCU------------UUUGGCgGACG- -5'
13426 5' -53.3 NC_003409.1 + 108519 0.66 0.970623
Target:  5'- uGCGCGuuaAGGggg-GGAAGGCCGCg-GUg -3'
miRNA:   3'- -CGCGC---UCCaagaCCUUUUGGCGgaCG- -5'
13426 5' -53.3 NC_003409.1 + 106669 0.71 0.805771
Target:  5'- aGCGaGAGGUUCUcccggcuGAAGACCGCCa-- -3'
miRNA:   3'- -CGCgCUCCAAGAc------CUUUUGGCGGacg -5'
13426 5' -53.3 NC_003409.1 + 103146 0.66 0.970623
Target:  5'- gGCGUGcGGacacugugcgUCUGGAAcAGCCuGCCUGa -3'
miRNA:   3'- -CGCGCuCCa---------AGACCUU-UUGG-CGGACg -5'
13426 5' -53.3 NC_003409.1 + 102757 1.15 0.00207
Target:  5'- uGCGCGAGGUUCUGGAAAACCGCCUGCa -3'
miRNA:   3'- -CGCGCUCCAAGACCUUUUGGCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 97087 0.68 0.918643
Target:  5'- cCG-GAGGUUcCUGGAAGccACCGCugacaggauuCUGCg -3'
miRNA:   3'- cGCgCUCCAA-GACCUUU--UGGCG----------GACG- -5'
13426 5' -53.3 NC_003409.1 + 96683 0.68 0.900145
Target:  5'- uGCGCGcacacuGGGUgaUCUGGAgacgauAGACUGCCUu- -3'
miRNA:   3'- -CGCGC------UCCA--AGACCU------UUUGGCGGAcg -5'
13426 5' -53.3 NC_003409.1 + 90329 0.68 0.900145
Target:  5'- uCGaUGAuGGUgCUGGAcuGCCGCCgGCg -3'
miRNA:   3'- cGC-GCU-CCAaGACCUuuUGGCGGaCG- -5'
13426 5' -53.3 NC_003409.1 + 88164 0.78 0.41809
Target:  5'- -gGCG-GGUUCccGGAGAuCCGCCUGCu -3'
miRNA:   3'- cgCGCuCCAAGa-CCUUUuGGCGGACG- -5'
13426 5' -53.3 NC_003409.1 + 87661 0.66 0.960816
Target:  5'- cGCGCGuGGcUUCcccgccGGGAAACCggugccgaaggcGCUUGCg -3'
miRNA:   3'- -CGCGCuCC-AAGa-----CCUUUUGG------------CGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.