miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 14679 0.7 0.949951
Target:  5'- -uCCCAGUCACcuAGGAUGA-ACGuUGCCu -3'
miRNA:   3'- guGGGUUAGUG--UUCUGCUuUGC-GCGG- -5'
13428 3' -50 NC_003409.1 + 113466 0.7 0.949951
Target:  5'- uGCCCAGgcCGCcgaccaugcuAGGGCGAuacCGCGCCa -3'
miRNA:   3'- gUGGGUUa-GUG----------UUCUGCUuu-GCGCGG- -5'
13428 3' -50 NC_003409.1 + 106105 0.7 0.958153
Target:  5'- -cCCCAAUCGCAacAGACGuucgaaGUGCUg -3'
miRNA:   3'- guGGGUUAGUGU--UCUGCuuug--CGCGG- -5'
13428 3' -50 NC_003409.1 + 127377 0.7 0.958153
Target:  5'- cCGCCgAuggcCACcAGAUGgcACGCGCCg -3'
miRNA:   3'- -GUGGgUua--GUGuUCUGCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 7731 0.69 0.965382
Target:  5'- uCGCCCAAgCAUccGGCcaGGucGACGCGCCu -3'
miRNA:   3'- -GUGGGUUaGUGuuCUG--CU--UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 114435 0.69 0.965382
Target:  5'- aCACCCGcaGUCAauCAGGGCcgugccCGCGCCu -3'
miRNA:   3'- -GUGGGU--UAGU--GUUCUGcuuu--GCGCGG- -5'
13428 3' -50 NC_003409.1 + 87909 0.69 0.965382
Target:  5'- -uUCCuGUCACGGGAUGGuggccucagGGCGCGUCu -3'
miRNA:   3'- guGGGuUAGUGUUCUGCU---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 113714 0.69 0.968331
Target:  5'- gGCCCAc-CGCGuguucgaGGGCGAGaaugGCGUGCCa -3'
miRNA:   3'- gUGGGUuaGUGU-------UCUGCUU----UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 37944 0.69 0.968647
Target:  5'- gAUCguAUCAauCGAGGCcAGGCGCGCCu -3'
miRNA:   3'- gUGGguUAGU--GUUCUGcUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24716 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24656 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 90723 0.69 0.968647
Target:  5'- -uCCUGGcUCugGAGACGAaggacccucGACGCGUCa -3'
miRNA:   3'- guGGGUU-AGugUUCUGCU---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24776 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24836 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24596 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 107946 0.69 0.968647
Target:  5'- gGCCUgcugcaAAUCGCcGGACuGGAGCGCGUg -3'
miRNA:   3'- gUGGG------UUAGUGuUCUG-CUUUGCGCGg -5'
13428 3' -50 NC_003409.1 + 44009 0.69 0.97284
Target:  5'- cCAUCCAGUCGacCGAGACGugggugguuaauaaaAAcaACGUGCCu -3'
miRNA:   3'- -GUGGGUUAGU--GUUCUGC---------------UU--UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 60071 0.69 0.973683
Target:  5'- gACCCAGgaggaCAUGAGAaaacggucgcucuuUGAAGCGCGCa -3'
miRNA:   3'- gUGGGUUa----GUGUUCU--------------GCUUUGCGCGg -5'
13428 3' -50 NC_003409.1 + 87175 0.69 0.974507
Target:  5'- uGCgCCGG-CGgAGGGCGuggccGACGCGCCa -3'
miRNA:   3'- gUG-GGUUaGUgUUCUGCu----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 49283 0.69 0.974507
Target:  5'- aCGCCaCGGUgGCccugccuAGugGGguGGCGCGCCa -3'
miRNA:   3'- -GUGG-GUUAgUGu------UCugCU--UUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.