miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13429 3' -62 NC_003409.1 + 128473 0.66 0.613906
Target:  5'- cGGCCACCAaAUGAGUuaaagauacacagguAaCAGCCCUCAu -3'
miRNA:   3'- -UCGGUGGUcUGCUCG---------------UgGUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 109323 0.66 0.609909
Target:  5'- -cCCACUGGugGAggaaacaaGCGgCAGCCUCCAc -3'
miRNA:   3'- ucGGUGGUCugCU--------CGUgGUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 114920 0.66 0.608911
Target:  5'- cGUCACCgAGAUGAGCuccaaaaacuacuGgCAGCCUCCc -3'
miRNA:   3'- uCGGUGG-UCUGCUCG-------------UgGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 52148 0.66 0.599929
Target:  5'- gGGUgGCCuguGGCGugugcGCGCUGGCCCCUu -3'
miRNA:   3'- -UCGgUGGu--CUGCu----CGUGGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 111964 0.66 0.589972
Target:  5'- gAGaCCcCCAG-UGAGUcCUGGCCCCCGg -3'
miRNA:   3'- -UC-GGuGGUCuGCUCGuGGUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 110946 0.66 0.589972
Target:  5'- cGCgAUaugagaGGACGGcGCuCCAGCCCCCc -3'
miRNA:   3'- uCGgUGg-----UCUGCU-CGuGGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 60155 0.66 0.589971
Target:  5'- uGGCCGCCAcGuACGAGgGCCuuGGUuuCCCCu -3'
miRNA:   3'- -UCGGUGGU-C-UGCUCgUGG--UCG--GGGGu -5'
13429 3' -62 NC_003409.1 + 127289 0.66 0.57015
Target:  5'- cGCCugagguCgGGACgGAGCACCGGCgCgCCCu -3'
miRNA:   3'- uCGGu-----GgUCUG-CUCGUGGUCG-G-GGGu -5'
13429 3' -62 NC_003409.1 + 33044 0.66 0.57015
Target:  5'- cGCUGCCccaaaAGGCGAgGCAgUAGCCCgCCGc -3'
miRNA:   3'- uCGGUGG-----UCUGCU-CGUgGUCGGG-GGU- -5'
13429 3' -62 NC_003409.1 + 131646 0.66 0.5603
Target:  5'- gGGCgGgUAGugaGAGCugCAGUCCCCu -3'
miRNA:   3'- -UCGgUgGUCug-CUCGugGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 52431 0.67 0.553432
Target:  5'- uGGCCGCCacgccugcuggauGGACGuGUuaggauuaugggaaaGCC-GCCCCCAc -3'
miRNA:   3'- -UCGGUGG-------------UCUGCuCG---------------UGGuCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 78686 0.67 0.550496
Target:  5'- cGGCUcuaaaacCCAGACGAcC-CCAGCCCCUu -3'
miRNA:   3'- -UCGGu------GGUCUGCUcGuGGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 93560 0.67 0.549519
Target:  5'- aGGCCGCCAGgaaacagGCG-GCGgCAGUCgCCAc -3'
miRNA:   3'- -UCGGUGGUC-------UGCuCGUgGUCGGgGGU- -5'
13429 3' -62 NC_003409.1 + 106977 0.67 0.540746
Target:  5'- uGUCucaCGGACGGGCuugucaggagguGCgGGCCCCCGg -3'
miRNA:   3'- uCGGug-GUCUGCUCG------------UGgUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 30668 0.67 0.540746
Target:  5'- cGCCuuCAGGCcu-CGCCAGCCUCCGc -3'
miRNA:   3'- uCGGugGUCUGcucGUGGUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 81241 0.67 0.531055
Target:  5'- cGGCCGa-GGACGaAGCGuCCGGCuuCCCCAc -3'
miRNA:   3'- -UCGGUggUCUGC-UCGU-GGUCG--GGGGU- -5'
13429 3' -62 NC_003409.1 + 88019 0.67 0.530089
Target:  5'- cGUCGCaCAGACGccgggggauacggGGCaACUAGCCCCUc -3'
miRNA:   3'- uCGGUG-GUCUGC-------------UCG-UGGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 42883 0.67 0.521428
Target:  5'- aGGUCGCCuccauGGC-AGCGCUcgagGGCCCCCu -3'
miRNA:   3'- -UCGGUGGu----CUGcUCGUGG----UCGGGGGu -5'
13429 3' -62 NC_003409.1 + 33004 0.67 0.511869
Target:  5'- cAGCCugCAGGgGAGCACac-UUCCCAg -3'
miRNA:   3'- -UCGGugGUCUgCUCGUGgucGGGGGU- -5'
13429 3' -62 NC_003409.1 + 113824 0.67 0.511869
Target:  5'- gGGCUGCCAGAC-AGUACaCuGUCUCCAg -3'
miRNA:   3'- -UCGGUGGUCUGcUCGUG-GuCGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.