Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1343 | 5' | -58.1 | NC_001335.1 | + | 38283 | 0.67 | 0.494829 |
|
Target: 5'- uCCGCUCGGCCgGCcagcccgcgacUCGCCaaauacucGUCGGCu -3' miRNA: 3'- uGGUGAGUCGGgUG-----------AGUGG--------CAGUCGc -5' |
|||||||
| 1343 | 5' | -58.1 | NC_001335.1 | + | 39623 | 0.69 | 0.354715 |
|
Target: 5'- --uGC-CAGCCCGCUUGCCGU-AGCGu -3' miRNA: 3'- uggUGaGUCGGGUGAGUGGCAgUCGC- -5' |
|||||||
| 1343 | 5' | -58.1 | NC_001335.1 | + | 39850 | 0.66 | 0.535318 |
|
Target: 5'- cGCCGCaUCAGaucgccuCCCACUgcagGCCGUCGuGCGa -3' miRNA: 3'- -UGGUG-AGUC-------GGGUGAg---UGGCAGU-CGC- -5' |
|||||||
| 1343 | 5' | -58.1 | NC_001335.1 | + | 41784 | 0.66 | 0.536373 |
|
Target: 5'- cAUCugUguGCCCGCcagcgUCcCCGUaCAGCGg -3' miRNA: 3'- -UGGugAguCGGGUG-----AGuGGCA-GUCGC- -5' |
|||||||
| 1343 | 5' | -58.1 | NC_001335.1 | + | 46268 | 0.69 | 0.354715 |
|
Target: 5'- cGCCGCguugCGGCCgucgCGCUgACCGUgGGCa -3' miRNA: 3'- -UGGUGa---GUCGG----GUGAgUGGCAgUCGc -5' |
|||||||
| 1343 | 5' | -58.1 | NC_001335.1 | + | 46764 | 0.67 | 0.445081 |
|
Target: 5'- -aCGC-CAGCCuCACggGCgGUCAGCGg -3' miRNA: 3'- ugGUGaGUCGG-GUGagUGgCAGUCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home