miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13438 5' -51.5 NC_003409.1 + 9795 0.68 0.950361
Target:  5'- -cCACGCUaaacGCCAGCAagGC-CAAacuGGCg -3'
miRNA:   3'- caGUGCGA----CGGUUGUuaCGaGUU---CCG- -5'
13438 5' -51.5 NC_003409.1 + 94511 0.68 0.945867
Target:  5'- -cCAuUGCgGCCAGC-AUGCUCAcgaggaauAGGCa -3'
miRNA:   3'- caGU-GCGaCGGUUGuUACGAGU--------UCCG- -5'
13438 5' -51.5 NC_003409.1 + 48676 0.68 0.9361
Target:  5'- aGUCACGCucgucaaagaUGCCGcucgcgauagACAGUGCUUccGGGUg -3'
miRNA:   3'- -CAGUGCG----------ACGGU----------UGUUACGAGu-UCCG- -5'
13438 5' -51.5 NC_003409.1 + 113463 0.68 0.9361
Target:  5'- -cCAgGCcGCCGACcAUGCU-AGGGCg -3'
miRNA:   3'- caGUgCGaCGGUUGuUACGAgUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 109706 0.68 0.9361
Target:  5'- aGUgGCGCauguccGCCGGCAGUGgUCcagcuGAGGCu -3'
miRNA:   3'- -CAgUGCGa-----CGGUUGUUACgAG-----UUCCG- -5'
13438 5' -51.5 NC_003409.1 + 93365 0.68 0.930822
Target:  5'- uUCA-GCUGCgGAgGAUGUUguGGGCg -3'
miRNA:   3'- cAGUgCGACGgUUgUUACGAguUCCG- -5'
13438 5' -51.5 NC_003409.1 + 45470 0.68 0.930822
Target:  5'- uGUCGC-CUGCCuGCAgaAUGUccuUCAAGGUu -3'
miRNA:   3'- -CAGUGcGACGGuUGU--UACG---AGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 101519 0.69 0.925279
Target:  5'- -gCGCGCUGCCucaaggggguCGAUGCUagaAGGGg -3'
miRNA:   3'- caGUGCGACGGuu--------GUUACGAg--UUCCg -5'
13438 5' -51.5 NC_003409.1 + 109533 0.69 0.921827
Target:  5'- gGUCGCGCgggGCCAGCGccaccucccuuggguAcGCgucCGGGGCg -3'
miRNA:   3'- -CAGUGCGa--CGGUUGU---------------UaCGa--GUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 31579 0.69 0.919472
Target:  5'- aUCgAUGCUGCUuuguAGC-AUGCUCAggaAGGCg -3'
miRNA:   3'- cAG-UGCGACGG----UUGuUACGAGU---UCCG- -5'
13438 5' -51.5 NC_003409.1 + 39667 0.69 0.9134
Target:  5'- -cCAUGCUGCgCAGCAacacGUGCUUcAGGa -3'
miRNA:   3'- caGUGCGACG-GUUGU----UACGAGuUCCg -5'
13438 5' -51.5 NC_003409.1 + 53552 0.69 0.907066
Target:  5'- -cCACGCacgucgagaaugUGCUAACAggaGUGCUCGAcgacGGCa -3'
miRNA:   3'- caGUGCG------------ACGGUUGU---UACGAGUU----CCG- -5'
13438 5' -51.5 NC_003409.1 + 115318 0.69 0.900471
Target:  5'- gGUCugcCGCUGCC-GCcAUGgUCGAGGUc -3'
miRNA:   3'- -CAGu--GCGACGGuUGuUACgAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 9886 0.7 0.89292
Target:  5'- gGUCugGCaGCCcauguccGCGAUuaaccugacucacGCUCAGGGCg -3'
miRNA:   3'- -CAGugCGaCGGu------UGUUA-------------CGAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 5334 0.7 0.879159
Target:  5'- gGUCAgGauaGCCAgaGCAAUGCUCAuGGUu -3'
miRNA:   3'- -CAGUgCga-CGGU--UGUUACGAGUuCCG- -5'
13438 5' -51.5 NC_003409.1 + 34158 0.71 0.855658
Target:  5'- cGUCgGCGaaaaaGUCAGCGGUGgUCGAGGCg -3'
miRNA:   3'- -CAG-UGCga---CGGUUGUUACgAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 118853 0.71 0.855658
Target:  5'- -cCACGCUugGCUAACAcgGCUgGAguGGCg -3'
miRNA:   3'- caGUGCGA--CGGUUGUuaCGAgUU--CCG- -5'
13438 5' -51.5 NC_003409.1 + 16697 0.71 0.821229
Target:  5'- gGUUACGaucaaagGCCAGCGGUGCggugggggUAAGGCu -3'
miRNA:   3'- -CAGUGCga-----CGGUUGUUACGa-------GUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 132814 0.71 0.820327
Target:  5'- --gGCGCUGuCCGAUggUGUccgcgucUCGGGGCa -3'
miRNA:   3'- cagUGCGAC-GGUUGuuACG-------AGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 24212 0.73 0.754041
Target:  5'- --gGCGC-GCCAGCGGUGggCGGGGCc -3'
miRNA:   3'- cagUGCGaCGGUUGUUACgaGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.