miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13440 5' -65.4 NC_003409.1 + 24817 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 24757 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 24697 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 24667 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 24637 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 24607 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 24727 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 24847 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 118874 0.66 0.48426
Target:  5'- gGAGuGGCGguGGgCGGgGCCCcuauaaUCCUGGc -3'
miRNA:   3'- -CUC-CCGCuuCCgGCCgCGGG------AGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 24787 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 24034 0.66 0.475297
Target:  5'- uGGGGGCcgGGAGGauGGgGCCCcgCCCa- -3'
miRNA:   3'- -CUCCCG--CUUCCggCCgCGGGa-GGGcu -5'
13440 5' -65.4 NC_003409.1 + 87347 0.66 0.466416
Target:  5'- cAGGGUGgcGcGUCGGCcacGCCCUCCg-- -3'
miRNA:   3'- cUCCCGCuuC-CGGCCG---CGGGAGGgcu -5'
13440 5' -65.4 NC_003409.1 + 16922 0.66 0.457623
Target:  5'- aGGGGUGcuGGCUuguuugGGCGCCaUUCCGAg -3'
miRNA:   3'- cUCCCGCuuCCGG------CCGCGGgAGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 24770 0.66 0.440307
Target:  5'- gGAGGGUGgcGcGCCGGgauccCCCUCCgGGg -3'
miRNA:   3'- -CUCCCGCuuC-CGGCCgc---GGGAGGgCU- -5'
13440 5' -65.4 NC_003409.1 + 24830 0.66 0.440307
Target:  5'- gGAGGGUGgcGcGCCGGgauccCCCUCCgGGg -3'
miRNA:   3'- -CUCCCGCuuC-CGGCCgc---GGGAGGgCU- -5'
13440 5' -65.4 NC_003409.1 + 24860 0.66 0.440307
Target:  5'- gGAGGGUGgcGcGCCGGgauccCCCUCCgGGg -3'
miRNA:   3'- -CUCCCGCuuC-CGGCCgc---GGGAGGgCU- -5'
13440 5' -65.4 NC_003409.1 + 24890 0.66 0.440307
Target:  5'- gGAGGGUGgcGcGCCGGgauccCCCUCCgGGg -3'
miRNA:   3'- -CUCCCGCuuC-CGGCCgc---GGGAGGgCU- -5'
13440 5' -65.4 NC_003409.1 + 24920 0.66 0.440307
Target:  5'- gGAGGGUGgcGcGCCGGgauccCCCUCCgGGg -3'
miRNA:   3'- -CUCCCGCuuC-CGGCCgc---GGGAGGgCU- -5'
13440 5' -65.4 NC_003409.1 + 24950 0.66 0.440307
Target:  5'- gGAGGGUGgcGcGCCGGgauccCCCUCCgGGg -3'
miRNA:   3'- -CUCCCGCuuC-CGGCCgc---GGGAGGgCU- -5'
13440 5' -65.4 NC_003409.1 + 24980 0.66 0.440307
Target:  5'- gGAGGGUGgcGcGCCGGgauccCCCUCCgGGg -3'
miRNA:   3'- -CUCCCGCuuC-CGGCCgc---GGGAGGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.