miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13444 5' -56.3 NC_003409.1 + 33981 0.7 0.677619
Target:  5'- gGGCGCgccaGGGACAGCGccCGCCAUgGACUUg -3'
miRNA:   3'- -CCGUG----CCCUGUCGCa-GUGGUG-UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 108950 0.7 0.677619
Target:  5'- cGGCucCGGGACAGUGgcuccugacacuUC-CCACAuucgACCCc -3'
miRNA:   3'- -CCGu-GCCCUGUCGC------------AGuGGUGU----UGGG- -5'
13444 5' -56.3 NC_003409.1 + 78273 0.7 0.677619
Target:  5'- ---uCGGGGCAGcCGUgGCUggcGCAGCCCg -3'
miRNA:   3'- ccguGCCCUGUC-GCAgUGG---UGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 56132 0.7 0.687687
Target:  5'- aGCGCcccgugaaugGGGGCAGUGcacgCACCAgGAUCCa -3'
miRNA:   3'- cCGUG----------CCCUGUCGCa---GUGGUgUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 32287 0.7 0.687687
Target:  5'- aGGCugGcGGACAccucccaCGUgGCCAgAGCCCc -3'
miRNA:   3'- -CCGugC-CCUGUc------GCAgUGGUgUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 93560 0.7 0.697709
Target:  5'- aGGCcgccaggaaACaGGcGGCGGCaGUCGCCAC-GCCCa -3'
miRNA:   3'- -CCG---------UG-CC-CUGUCG-CAGUGGUGuUGGG- -5'
13444 5' -56.3 NC_003409.1 + 33602 0.7 0.707676
Target:  5'- aGGCGCGaucGACcGUGUC-CCACAaacaACCCg -3'
miRNA:   3'- -CCGUGCc--CUGuCGCAGuGGUGU----UGGG- -5'
13444 5' -56.3 NC_003409.1 + 56030 0.7 0.711646
Target:  5'- aGGUcCGcGACGGCGUCgACCagggcgucaaugucgGCGACCCg -3'
miRNA:   3'- -CCGuGCcCUGUCGCAG-UGG---------------UGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 130924 0.7 0.717581
Target:  5'- uGCGgGGGACGGUGcugccCAgCugGGCCCa -3'
miRNA:   3'- cCGUgCCCUGUCGCa----GUgGugUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 38445 0.7 0.717581
Target:  5'- aGGaa-GGGACGGCGcCAUCACGggcGCCa -3'
miRNA:   3'- -CCgugCCCUGUCGCaGUGGUGU---UGGg -5'
13444 5' -56.3 NC_003409.1 + 22372 0.7 0.717581
Target:  5'- uGGCACuGGACAGgGaauucUCGCaACAAUCCg -3'
miRNA:   3'- -CCGUGcCCUGUCgC-----AGUGgUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 54437 0.7 0.717581
Target:  5'- uGCGCGaGGACGcgcaCGUCuCCACGGCCg -3'
miRNA:   3'- cCGUGC-CCUGUc---GCAGuGGUGUUGGg -5'
13444 5' -56.3 NC_003409.1 + 121529 0.7 0.721523
Target:  5'- -uUugGGGACcaaauuucuauaauuGGUGUCACCGCGgcagcucuaGCCCu -3'
miRNA:   3'- ccGugCCCUG---------------UCGCAGUGGUGU---------UGGG- -5'
13444 5' -56.3 NC_003409.1 + 88094 0.69 0.727413
Target:  5'- aGGCcuacCGGGcACGGCGcCGCC-CAAgCCg -3'
miRNA:   3'- -CCGu---GCCC-UGUCGCaGUGGuGUUgGG- -5'
13444 5' -56.3 NC_003409.1 + 51884 0.69 0.736193
Target:  5'- cGCGCaGGGuCAGCGgagaccgcgccacUCACCACAuggcGCUCg -3'
miRNA:   3'- cCGUG-CCCuGUCGC-------------AGUGGUGU----UGGG- -5'
13444 5' -56.3 NC_003409.1 + 36180 0.69 0.737164
Target:  5'- uGGUgACGGGgACAGCaGUCGCCGaugauucucCGAUCCc -3'
miRNA:   3'- -CCG-UGCCC-UGUCG-CAGUGGU---------GUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 87349 0.69 0.737164
Target:  5'- cGCA-GGGugGcGCGUCGgCCAC-GCCCu -3'
miRNA:   3'- cCGUgCCCugU-CGCAGU-GGUGuUGGG- -5'
13444 5' -56.3 NC_003409.1 + 67808 0.69 0.737164
Target:  5'- gGGUGCGGcGcGCAGgGggCGCCACGaggGCCCu -3'
miRNA:   3'- -CCGUGCC-C-UGUCgCa-GUGGUGU---UGGG- -5'
13444 5' -56.3 NC_003409.1 + 129146 0.69 0.746826
Target:  5'- uGGCugGGGGCAGgG-CAaaacccaaaaCGCGACaCCa -3'
miRNA:   3'- -CCGugCCCUGUCgCaGUg---------GUGUUG-GG- -5'
13444 5' -56.3 NC_003409.1 + 13880 0.69 0.756387
Target:  5'- --uGCGGGAgccgAGCGUCaagGCCGCGGCCa -3'
miRNA:   3'- ccgUGCCCUg---UCGCAG---UGGUGUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.