miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13445 5' -48.6 NC_003409.1 + 87318 0.66 0.997879
Target:  5'- -cGGCG-CACCACCcaccccAGAGGUgGCAGAg -3'
miRNA:   3'- acCCGCaGUGGUGG------UUUUUAaCGUUU- -5'
13445 5' -48.6 NC_003409.1 + 11169 0.66 0.997879
Target:  5'- gGGGCucCGCCGCUAGGAggUGCc-- -3'
miRNA:   3'- aCCCGcaGUGGUGGUUUUuaACGuuu -5'
13445 5' -48.6 NC_003409.1 + 38052 0.66 0.997879
Target:  5'- gGGGCGUCGacuCCGucauguUCAGAAAUaUGCGAGu -3'
miRNA:   3'- aCCCGCAGU---GGU------GGUUUUUA-ACGUUU- -5'
13445 5' -48.6 NC_003409.1 + 43659 0.66 0.997454
Target:  5'- gGGGUgccaaccucGUCACCGCCGuuagcuacGGAAggGCGAu -3'
miRNA:   3'- aCCCG---------CAGUGGUGGU--------UUUUaaCGUUu -5'
13445 5' -48.6 NC_003409.1 + 107962 0.66 0.996851
Target:  5'- gGGGCGUgC-CCACCGuggccugcUGCAAAu -3'
miRNA:   3'- aCCCGCA-GuGGUGGUuuuua---ACGUUU- -5'
13445 5' -48.6 NC_003409.1 + 79718 0.66 0.996326
Target:  5'- gUGGcGCGcgcgCACCACCAAAucaggacGcgUGCAc- -3'
miRNA:   3'- -ACC-CGCa---GUGGUGGUUU-------UuaACGUuu -5'
13445 5' -48.6 NC_003409.1 + 46967 0.66 0.995731
Target:  5'- gGGaGCGUacuGCCGCuCGGAGAUUGCc-- -3'
miRNA:   3'- aCC-CGCAg--UGGUG-GUUUUUAACGuuu -5'
13445 5' -48.6 NC_003409.1 + 133308 0.67 0.99498
Target:  5'- aGGGCGUU---GCCAGGAGUggugGCGAu -3'
miRNA:   3'- aCCCGCAGuggUGGUUUUUAa---CGUUu -5'
13445 5' -48.6 NC_003409.1 + 75164 0.67 0.99498
Target:  5'- cGGGCG-CGCCACUuugGGAAGgcgcUGUAAGg -3'
miRNA:   3'- aCCCGCaGUGGUGG---UUUUUa---ACGUUU- -5'
13445 5' -48.6 NC_003409.1 + 45245 0.67 0.992065
Target:  5'- gGGGCGcCACguCCAGGAcgUGUc-- -3'
miRNA:   3'- aCCCGCaGUGguGGUUUUuaACGuuu -5'
13445 5' -48.6 NC_003409.1 + 133546 0.67 0.99084
Target:  5'- aGGGCGUacaGCagGCCGAGAugcUGCAGGa -3'
miRNA:   3'- aCCCGCAg--UGg-UGGUUUUua-ACGUUU- -5'
13445 5' -48.6 NC_003409.1 + 65646 0.68 0.98947
Target:  5'- gGGGUGUC-CaGCCAAcuGUUGUAAAa -3'
miRNA:   3'- aCCCGCAGuGgUGGUUuuUAACGUUU- -5'
13445 5' -48.6 NC_003409.1 + 21387 0.68 0.98947
Target:  5'- uUGGGCGUCACCGugGGAAc-UGUGAGu -3'
miRNA:   3'- -ACCCGCAGUGGUggUUUUuaACGUUU- -5'
13445 5' -48.6 NC_003409.1 + 28552 0.68 0.987945
Target:  5'- gGGGCGUgGCUuCCAAAAAUgggugGCu-- -3'
miRNA:   3'- aCCCGCAgUGGuGGUUUUUAa----CGuuu -5'
13445 5' -48.6 NC_003409.1 + 91735 0.68 0.987945
Target:  5'- gGGGUGUCcCCugCAA----UGCAAGg -3'
miRNA:   3'- aCCCGCAGuGGugGUUuuuaACGUUU- -5'
13445 5' -48.6 NC_003409.1 + 110009 0.68 0.983589
Target:  5'- cGGGCGcCACCGCCucccgccGCGGc -3'
miRNA:   3'- aCCCGCaGUGGUGGuuuuuaaCGUUu -5'
13445 5' -48.6 NC_003409.1 + 45897 0.69 0.980084
Target:  5'- aGGGCGUCGaCACCAugu-UUGUggGc -3'
miRNA:   3'- aCCCGCAGUgGUGGUuuuuAACGuuU- -5'
13445 5' -48.6 NC_003409.1 + 95377 0.69 0.980084
Target:  5'- aGGGgGUCGCCGCCAAcgucccGCu-- -3'
miRNA:   3'- aCCCgCAGUGGUGGUUuuuaa-CGuuu -5'
13445 5' -48.6 NC_003409.1 + 43379 0.69 0.974955
Target:  5'- aGGGCGUCcaUACCAAAc--UGCAAAg -3'
miRNA:   3'- aCCCGCAGugGUGGUUUuuaACGUUU- -5'
13445 5' -48.6 NC_003409.1 + 102297 0.69 0.974393
Target:  5'- cUGGGCagcuacaGUC-CCACCGgcuuggccuucacAGAAUUGCAAAa -3'
miRNA:   3'- -ACCCG-------CAGuGGUGGU-------------UUUUAACGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.