miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13448 5' -63.9 NC_003409.1 + 24473 0.66 0.529674
Target:  5'- uGCUGCCggGGCUCCuggggugcugccgggGCUCCugggGUGCUGCCGg -3'
miRNA:   3'- -CGGUGG--CCGGGG---------------UGGGG----UACGACGGU- -5'
13448 5' -63.9 NC_003409.1 + 24533 0.66 0.529674
Target:  5'- uGCUGCCggGGCUCCuggggugcugccgggGCUCCugggGUGCUGCCGg -3'
miRNA:   3'- -CGGUGG--CCGGGG---------------UGGGG----UACGACGGU- -5'
13448 5' -63.9 NC_003409.1 + 24593 0.66 0.529674
Target:  5'- uGCUGCCggGGCUCCuggggugcugccgggGCUCCugggGUGCUGCCGg -3'
miRNA:   3'- -CGGUGG--CCGGGG---------------UGGGG----UACGACGGU- -5'
13448 5' -63.9 NC_003409.1 + 24653 0.66 0.529674
Target:  5'- uGCUGCCggGGCUCCuggggugcugccgggGCUCCugggGUGCUGCCGg -3'
miRNA:   3'- -CGGUGG--CCGGGG---------------UGGGG----UACGACGGU- -5'
13448 5' -63.9 NC_003409.1 + 24713 0.66 0.529674
Target:  5'- uGCUGCCggGGCUCCuggggugcugccgggGCUCCugggGUGCUGCCGg -3'
miRNA:   3'- -CGGUGG--CCGGGG---------------UGGGG----UACGACGGU- -5'
13448 5' -63.9 NC_003409.1 + 102491 0.66 0.52588
Target:  5'- cGCCGCgCuGCCCuCGCaaCUCAUGCggGCCAu -3'
miRNA:   3'- -CGGUG-GcCGGG-GUG--GGGUACGa-CGGU- -5'
13448 5' -63.9 NC_003409.1 + 46021 0.66 0.516437
Target:  5'- aGUCAUC-GCCCCGgCCCAcgugGCcGCCAu -3'
miRNA:   3'- -CGGUGGcCGGGGUgGGGUa---CGaCGGU- -5'
13448 5' -63.9 NC_003409.1 + 22570 0.66 0.504266
Target:  5'- gGCCAgCGGUCCUGCCaCCAucauggccucggauUGUUGCgAg -3'
miRNA:   3'- -CGGUgGCCGGGGUGG-GGU--------------ACGACGgU- -5'
13448 5' -63.9 NC_003409.1 + 16632 0.66 0.497764
Target:  5'- -aCGCUGGCCCCGCgCg--GCcGCCAg -3'
miRNA:   3'- cgGUGGCCGGGGUGgGguaCGaCGGU- -5'
13448 5' -63.9 NC_003409.1 + 33747 0.66 0.496838
Target:  5'- uGCCcuACCGGaUCCAaacgcCCCCAUGCUgaaagggGCCAg -3'
miRNA:   3'- -CGG--UGGCCgGGGU-----GGGGUACGA-------CGGU- -5'
13448 5' -63.9 NC_003409.1 + 88131 0.66 0.48854
Target:  5'- cGCUgACCGGCCCUucagACCCUcacucaucugGUGCagGCCu -3'
miRNA:   3'- -CGG-UGGCCGGGG----UGGGG----------UACGa-CGGu -5'
13448 5' -63.9 NC_003409.1 + 131411 0.66 0.479398
Target:  5'- cCCACCu-CCCCGCgCCGUGUgGCCGc -3'
miRNA:   3'- cGGUGGccGGGGUGgGGUACGaCGGU- -5'
13448 5' -63.9 NC_003409.1 + 116409 0.67 0.470341
Target:  5'- cGCCugCGGUcgguCCCGCCCgGggcGCgaagcGCCAg -3'
miRNA:   3'- -CGGugGCCG----GGGUGGGgUa--CGa----CGGU- -5'
13448 5' -63.9 NC_003409.1 + 94167 0.67 0.461372
Target:  5'- -aCACC-GCCCC-CCCCAgccgGUUGUCGg -3'
miRNA:   3'- cgGUGGcCGGGGuGGGGUa---CGACGGU- -5'
13448 5' -63.9 NC_003409.1 + 128095 0.67 0.452494
Target:  5'- cUCACCuGcGCCaucaCGCCCCGUGCUGaCAu -3'
miRNA:   3'- cGGUGG-C-CGGg---GUGGGGUACGACgGU- -5'
13448 5' -63.9 NC_003409.1 + 132489 0.67 0.452493
Target:  5'- --uGaaGGCCCUGCCCCAggaGCUGCUu -3'
miRNA:   3'- cggUggCCGGGGUGGGGUa--CGACGGu -5'
13448 5' -63.9 NC_003409.1 + 66509 0.67 0.443709
Target:  5'- uGCC-CCuGCUUCACCCCGUGC-GCg- -3'
miRNA:   3'- -CGGuGGcCGGGGUGGGGUACGaCGgu -5'
13448 5' -63.9 NC_003409.1 + 87457 0.67 0.435021
Target:  5'- cGCCugUuuGGCaCCCACCaguuggucacgCCGUGgUGCCGg -3'
miRNA:   3'- -CGGugG--CCG-GGGUGG-----------GGUACgACGGU- -5'
13448 5' -63.9 NC_003409.1 + 35529 0.68 0.421329
Target:  5'- uCCGCCGcGCCCCACCgaguccgcuccaaaaCCGccuuCUGCCAu -3'
miRNA:   3'- cGGUGGC-CGGGGUGG---------------GGUac--GACGGU- -5'
13448 5' -63.9 NC_003409.1 + 24464 0.68 0.417947
Target:  5'- aGCC-CCGGCagCACCCCA-GgaGCCc -3'
miRNA:   3'- -CGGuGGCCGggGUGGGGUaCgaCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.