miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13449 5' -59.7 NC_003409.1 + 52345 0.65 0.726433
Target:  5'- uCGCACUuuuUAGAGGCguGCCUAguguuacGGGgGCUGg -3'
miRNA:   3'- -GUGUGG---GUCUCCG--UGGGU-------UCCgCGAC- -5'
13449 5' -59.7 NC_003409.1 + 74088 0.66 0.717581
Target:  5'- -cCGCCCGGAaGCucuucGCCCGAGGCuuCUGg -3'
miRNA:   3'- guGUGGGUCUcCG-----UGGGUUCCGc-GAC- -5'
13449 5' -59.7 NC_003409.1 + 87614 0.66 0.717581
Target:  5'- gGCAUCaCAGaAGGCcgggcuCCuCAGGGUGCUGc -3'
miRNA:   3'- gUGUGG-GUC-UCCGu-----GG-GUUCCGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 90248 0.66 0.717581
Target:  5'- gACA-CgAGAGGCcuACCaCGAGGCGCa- -3'
miRNA:   3'- gUGUgGgUCUCCG--UGG-GUUCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 94258 0.66 0.707676
Target:  5'- aCACACCCAuaacccGGGacaGCACCCA-GGCaCUGu -3'
miRNA:   3'- -GUGUGGGU------CUC---CGUGGGUuCCGcGAC- -5'
13449 5' -59.7 NC_003409.1 + 35618 0.66 0.707676
Target:  5'- -cCGCCCAGAccucucauacGGCACCCuuccgaaaAAGGCaGCa- -3'
miRNA:   3'- guGUGGGUCU----------CCGUGGG--------UUCCG-CGac -5'
13449 5' -59.7 NC_003409.1 + 107650 0.66 0.707676
Target:  5'- cCGCugCCAG-GGCAuCCCAgucagcGGGcCGCa- -3'
miRNA:   3'- -GUGugGGUCuCCGU-GGGU------UCC-GCGac -5'
13449 5' -59.7 NC_003409.1 + 123599 0.66 0.697709
Target:  5'- aCACACaCCA---GCACCCAuGGCGCc- -3'
miRNA:   3'- -GUGUG-GGUcucCGUGGGUuCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 67814 0.66 0.691701
Target:  5'- gGCGCgCAGgGGGCGCCacgagggcccuucauCAGGGuCGCUGu -3'
miRNA:   3'- gUGUGgGUC-UCCGUGG---------------GUUCC-GCGAC- -5'
13449 5' -59.7 NC_003409.1 + 46469 0.66 0.687687
Target:  5'- gCACGCCCccGGGGGUugCUggGG-GuCUGg -3'
miRNA:   3'- -GUGUGGG--UCUCCGugGGuuCCgC-GAC- -5'
13449 5' -59.7 NC_003409.1 + 31952 0.66 0.677619
Target:  5'- cCACuguGCCgCGucGGCGcCCCAGGGCGCa- -3'
miRNA:   3'- -GUG---UGG-GUcuCCGU-GGGUUCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 131741 0.67 0.671561
Target:  5'- gGCACUgGuuGAGGUGCCCcagguacacuugucaGAGGUGCUGc -3'
miRNA:   3'- gUGUGGgU--CUCCGUGGG---------------UUCCGCGAC- -5'
13449 5' -59.7 NC_003409.1 + 133301 0.67 0.667515
Target:  5'- gACugCCAGGGcGUugCCAGGaGUGgUGg -3'
miRNA:   3'- gUGugGGUCUC-CGugGGUUC-CGCgAC- -5'
13449 5' -59.7 NC_003409.1 + 95682 0.67 0.667515
Target:  5'- aGCACaaAGAGGC-CUCAcaagAGGCGCUc -3'
miRNA:   3'- gUGUGggUCUCCGuGGGU----UCCGCGAc -5'
13449 5' -59.7 NC_003409.1 + 118551 0.67 0.667515
Target:  5'- gCGCACCCAGGa--ACCCGGcgcGGCGCa- -3'
miRNA:   3'- -GUGUGGGUCUccgUGGGUU---CCGCGac -5'
13449 5' -59.7 NC_003409.1 + 104644 0.67 0.64723
Target:  5'- cCGCGCCUAguGAGGCACCauu-GCGCa- -3'
miRNA:   3'- -GUGUGGGU--CUCCGUGGguucCGCGac -5'
13449 5' -59.7 NC_003409.1 + 87720 0.67 0.64723
Target:  5'- -uCAgCCAGGGuGCACCUcuGGCGCc- -3'
miRNA:   3'- guGUgGGUCUC-CGUGGGuuCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 87647 0.67 0.637066
Target:  5'- -cCGCCgGGAaaccGGUGCCgAAGGCGCUu -3'
miRNA:   3'- guGUGGgUCU----CCGUGGgUUCCGCGAc -5'
13449 5' -59.7 NC_003409.1 + 38603 0.67 0.626898
Target:  5'- uGCAUCCAGccaaguuGCGCgCCGAGGCGCc- -3'
miRNA:   3'- gUGUGGGUCuc-----CGUG-GGUUCCGCGac -5'
13449 5' -59.7 NC_003409.1 + 12589 0.68 0.586339
Target:  5'- cCACcaACCCAGAGGCGguUCCGauGGGgGCa- -3'
miRNA:   3'- -GUG--UGGGUCUCCGU--GGGU--UCCgCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.