Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 90490 | 0.68 | 0.999989 |
Target: 5'- aUC-ACAGCCCGGAGGCgA-CAc -3' miRNA: 3'- gAGuUGUCGGGCUUUUGgUaGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 90169 | 0.66 | 1 |
Target: 5'- -gCGGCAGUCC-AGcACCAUCAu -3' miRNA: 3'- gaGUUGUCGGGcUUuUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 89465 | 0.68 | 0.999984 |
Target: 5'- aCUUAaccACAGCCCGucAAACCA-CAg -3' miRNA: 3'- -GAGU---UGUCGGGCu-UUUGGUaGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 87544 | 0.66 | 0.999999 |
Target: 5'- -cCAGCGcccccgcGCCCGGguaugcgAAACCAUCAu -3' miRNA: 3'- gaGUUGU-------CGGGCU-------UUUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 84533 | 0.67 | 0.999998 |
Target: 5'- -aCGACGGCagagggucaGGAGGCCGUCAu -3' miRNA: 3'- gaGUUGUCGgg-------CUUUUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 84282 | 0.75 | 0.981077 |
Target: 5'- uUCGACAGCCCGAcuGGCUugucGUCAg -3' miRNA: 3'- gAGUUGUCGGGCUu-UUGG----UAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 80084 | 0.67 | 0.999995 |
Target: 5'- --aGACAGUCUGGAGacggagGCCAUCGa -3' miRNA: 3'- gagUUGUCGGGCUUU------UGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 79415 | 0.66 | 1 |
Target: 5'- -gCGACAGCgCCG-AGACgAUCGc -3' miRNA: 3'- gaGUUGUCG-GGCuUUUGgUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 78292 | 0.67 | 0.999998 |
Target: 5'- ---cGCAGCCCGguAGCCG-CAu -3' miRNA: 3'- gaguUGUCGGGCuuUUGGUaGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 76177 | 0.67 | 0.999996 |
Target: 5'- --aGACGGCCUcuAGGGCCGUCAu -3' miRNA: 3'- gagUUGUCGGGc-UUUUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 76020 | 0.69 | 0.999939 |
Target: 5'- --uGACGGCCCuaGAGGCCGUCu -3' miRNA: 3'- gagUUGUCGGGc-UUUUGGUAGu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 74393 | 0.68 | 0.999964 |
Target: 5'- uUCcuuCGGCCCGGAGucuccggcggauauACCGUCAc -3' miRNA: 3'- gAGuu-GUCGGGCUUU--------------UGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 69520 | 0.69 | 0.999917 |
Target: 5'- -gCAGCAGCCgGAGAGCgCAcgCAg -3' miRNA: 3'- gaGUUGUCGGgCUUUUG-GUa-GU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 68646 | 0.66 | 0.999999 |
Target: 5'- ---uACAGCCCuGGAAccgagGCCAUCGc -3' miRNA: 3'- gaguUGUCGGG-CUUU-----UGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 63821 | 0.68 | 0.999968 |
Target: 5'- -cCAACAGCCCGguGACgCAa-- -3' miRNA: 3'- gaGUUGUCGGGCuuUUG-GUagu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 62960 | 0.7 | 0.999851 |
Target: 5'- aUCGAU-GCUCGAGAACUGUCGa -3' miRNA: 3'- gAGUUGuCGGGCUUUUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 58661 | 0.67 | 0.999998 |
Target: 5'- cCUC-ACAGCCCGuagacguggacggGGAACCGcUCGa -3' miRNA: 3'- -GAGuUGUCGGGC-------------UUUUGGU-AGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 52552 | 0.66 | 1 |
Target: 5'- --aAACAGCCCGAugugcaaaAGACaGUCAg -3' miRNA: 3'- gagUUGUCGGGCU--------UUUGgUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 51924 | 0.67 | 0.999998 |
Target: 5'- gCUCGA-GGCuCCGGGAACCGUg- -3' miRNA: 3'- -GAGUUgUCG-GGCUUUUGGUAgu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 49432 | 0.66 | 0.999999 |
Target: 5'- aUCuACAGCCCccccauAGCCAUCc -3' miRNA: 3'- gAGuUGUCGGGcuu---UUGGUAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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