miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13457 3' -42.5 NC_003409.1 + 107084 0.7 0.999744
Target:  5'- aUCAACucuGGCCaCGAccGCCAUCGa -3'
miRNA:   3'- gAGUUG---UCGG-GCUuuUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 32052 0.7 0.999804
Target:  5'- --aGACAGcCCCGGGAGCCAc-- -3'
miRNA:   3'- gagUUGUC-GGGCUUUUGGUagu -5'
13457 3' -42.5 NC_003409.1 + 34171 0.7 0.999804
Target:  5'- gUCAGCGGUggUCGAGgcGACCGUCGu -3'
miRNA:   3'- gAGUUGUCG--GGCUU--UUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 76020 0.69 0.999939
Target:  5'- --uGACGGCCCuaGAGGCCGUCu -3'
miRNA:   3'- gagUUGUCGGGc-UUUUGGUAGu -5'
13457 3' -42.5 NC_003409.1 + 74393 0.68 0.999964
Target:  5'- uUCcuuCGGCCCGGAGucuccggcggauauACCGUCAc -3'
miRNA:   3'- gAGuu-GUCGGGCUUU--------------UGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 128886 0.68 0.999968
Target:  5'- uUUuACAGCCCGAugGCCcuUCAg -3'
miRNA:   3'- gAGuUGUCGGGCUuuUGGu-AGU- -5'
13457 3' -42.5 NC_003409.1 + 89465 0.68 0.999984
Target:  5'- aCUUAaccACAGCCCGucAAACCA-CAg -3'
miRNA:   3'- -GAGU---UGUCGGGCu-UUUGGUaGU- -5'
13457 3' -42.5 NC_003409.1 + 108313 0.68 0.999984
Target:  5'- uCUCGAgggacuguccUGGCUCGAgcAGACCAUCAa -3'
miRNA:   3'- -GAGUU----------GUCGGGCU--UUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 84533 0.67 0.999998
Target:  5'- -aCGACGGCagagggucaGGAGGCCGUCAu -3'
miRNA:   3'- gaGUUGUCGgg-------CUUUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 111733 0.67 0.999998
Target:  5'- gUUAGCAGUCCGggGuCCAc-- -3'
miRNA:   3'- gAGUUGUCGGGCuuUuGGUagu -5'
13457 3' -42.5 NC_003409.1 + 27216 0.67 0.999997
Target:  5'- -cCAACuGCUCGAGGcgacaacGCCAUCGu -3'
miRNA:   3'- gaGUUGuCGGGCUUU-------UGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 76177 0.67 0.999996
Target:  5'- --aGACGGCCUcuAGGGCCGUCAu -3'
miRNA:   3'- gagUUGUCGGGc-UUUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 120379 0.67 0.999995
Target:  5'- gCUC-ACGGCCCGuguGCCAg-- -3'
miRNA:   3'- -GAGuUGUCGGGCuuuUGGUagu -5'
13457 3' -42.5 NC_003409.1 + 87544 0.66 0.999999
Target:  5'- -cCAGCGcccccgcGCCCGGguaugcgAAACCAUCAu -3'
miRNA:   3'- gaGUUGU-------CGGGCU-------UUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 11943 0.66 0.999999
Target:  5'- -gCAGCGcuGCCUGAAAACguUCAc -3'
miRNA:   3'- gaGUUGU--CGGGCUUUUGguAGU- -5'
13457 3' -42.5 NC_003409.1 + 134497 0.66 0.999999
Target:  5'- uCUCGGCAGCCUGAcuACa---- -3'
miRNA:   3'- -GAGUUGUCGGGCUuuUGguagu -5'
13457 3' -42.5 NC_003409.1 + 49432 0.66 0.999999
Target:  5'- aUCuACAGCCCccccauAGCCAUCc -3'
miRNA:   3'- gAGuUGUCGGGcuu---UUGGUAGu -5'
13457 3' -42.5 NC_003409.1 + 28873 0.66 0.999999
Target:  5'- aUCGGCGGCaccaaUGAAAACCAg-- -3'
miRNA:   3'- gAGUUGUCGg----GCUUUUGGUagu -5'
13457 3' -42.5 NC_003409.1 + 22568 0.66 1
Target:  5'- -cCAGCGGUCCugccACCAUCAu -3'
miRNA:   3'- gaGUUGUCGGGcuuuUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 129058 0.75 0.988978
Target:  5'- aCUCAAggaGGCCUGAAgGGCCAUCGg -3'
miRNA:   3'- -GAGUUg--UCGGGCUU-UUGGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.