miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13462 3' -59 NC_003409.1 + 80583 0.69 0.593989
Target:  5'- gACUGCCCgCaCCAauaaACGCACCGcuCGCCu -3'
miRNA:   3'- gUGACGGG-G-GGUg---UGUGUGGUc-GUGG- -5'
13462 3' -59 NC_003409.1 + 111099 0.68 0.604089
Target:  5'- cCAC-GCCCCCaCACGCcauagACAUUAGC-CCa -3'
miRNA:   3'- -GUGaCGGGGG-GUGUG-----UGUGGUCGuGG- -5'
13462 3' -59 NC_003409.1 + 132643 0.68 0.613197
Target:  5'- gGgUGCCCCgagaCGCGgACACCaucggacAGCGCCa -3'
miRNA:   3'- gUgACGGGGg---GUGUgUGUGG-------UCGUGG- -5'
13462 3' -59 NC_003409.1 + 113369 0.68 0.614209
Target:  5'- aGCUGCUgCgCCGCACAaAUCuGCGCCu -3'
miRNA:   3'- gUGACGGgG-GGUGUGUgUGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 62148 0.68 0.624343
Target:  5'- --aUGCCCCCCuuuaccauUugACuGCCuAGCACCa -3'
miRNA:   3'- gugACGGGGGGu-------GugUG-UGG-UCGUGG- -5'
13462 3' -59 NC_003409.1 + 36027 0.68 0.633468
Target:  5'- uGCUGUCCCCguCAC-CACgCAGCuuaugguACCg -3'
miRNA:   3'- gUGACGGGGGguGUGuGUG-GUCG-------UGG- -5'
13462 3' -59 NC_003409.1 + 31126 0.68 0.634483
Target:  5'- cCGCUGaacccaCCCCCGCcuccaGCACGCagAGCAUCc -3'
miRNA:   3'- -GUGACg-----GGGGGUG-----UGUGUGg-UCGUGG- -5'
13462 3' -59 NC_003409.1 + 115769 0.68 0.653736
Target:  5'- -uCUGCCUCCUcugcgagugccuuGCgGCACACCcagaGGCACCc -3'
miRNA:   3'- guGACGGGGGG-------------UG-UGUGUGG----UCGUGG- -5'
13462 3' -59 NC_003409.1 + 127946 0.68 0.654748
Target:  5'- aACUccGCCCUCCAC-UACGC-GGCGCCc -3'
miRNA:   3'- gUGA--CGGGGGGUGuGUGUGgUCGUGG- -5'
13462 3' -59 NC_003409.1 + 12118 0.68 0.654748
Target:  5'- ---gGCCCCCCGCACccAgGCCAGagACUc -3'
miRNA:   3'- gugaCGGGGGGUGUG--UgUGGUCg-UGG- -5'
13462 3' -59 NC_003409.1 + 87776 0.67 0.663848
Target:  5'- uGCUGCCCCcaguuggauuccgCCGCACGC-CCAaGCGg- -3'
miRNA:   3'- gUGACGGGG-------------GGUGUGUGuGGU-CGUgg -5'
13462 3' -59 NC_003409.1 + 87467 0.67 0.664858
Target:  5'- -uCUGUagaugCCCCGCAaGCGCCuucGGCACCg -3'
miRNA:   3'- guGACGg----GGGGUGUgUGUGG---UCGUGG- -5'
13462 3' -59 NC_003409.1 + 116587 0.67 0.674943
Target:  5'- uGCUGCCCCuagaccugucuaCCGuCGCAC-CCGGcCGCUg -3'
miRNA:   3'- gUGACGGGG------------GGU-GUGUGuGGUC-GUGG- -5'
13462 3' -59 NC_003409.1 + 35961 0.67 0.674943
Target:  5'- cCAC-GUCCCCCAUugACgcgucuGCCGGCcuaguuGCCg -3'
miRNA:   3'- -GUGaCGGGGGGUGugUG------UGGUCG------UGG- -5'
13462 3' -59 NC_003409.1 + 51215 0.67 0.674943
Target:  5'- gCACaaUGUCCCguuUCAgACACGCUAGCAUCc -3'
miRNA:   3'- -GUG--ACGGGG---GGUgUGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 115457 0.67 0.674943
Target:  5'- uGCUGCCagaUUACAgACACCAcCACCg -3'
miRNA:   3'- gUGACGGgg-GGUGUgUGUGGUcGUGG- -5'
13462 3' -59 NC_003409.1 + 131225 0.67 0.674943
Target:  5'- gCACUGCUCCCagGCA-GCACCAacGCgGCCa -3'
miRNA:   3'- -GUGACGGGGGg-UGUgUGUGGU--CG-UGG- -5'
13462 3' -59 NC_003409.1 + 88144 0.67 0.684993
Target:  5'- -cCUGCUCCaucaACGCugACCGGC-CCu -3'
miRNA:   3'- guGACGGGGgg--UGUGugUGGUCGuGG- -5'
13462 3' -59 NC_003409.1 + 4731 0.67 0.684993
Target:  5'- aCAUUGCCCCUgACACaggucACACauuugacuaGGUGCCg -3'
miRNA:   3'- -GUGACGGGGGgUGUG-----UGUGg--------UCGUGG- -5'
13462 3' -59 NC_003409.1 + 132809 0.67 0.695
Target:  5'- gCACagGCgCgCgGCGCGCugCAGUACCu -3'
miRNA:   3'- -GUGa-CGgGgGgUGUGUGugGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.