miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13462 3' -59 NC_003409.1 + 12118 0.68 0.654748
Target:  5'- ---gGCCCCCCGCACccAgGCCAGagACUc -3'
miRNA:   3'- gugaCGGGGGGUGUG--UgUGGUCg-UGG- -5'
13462 3' -59 NC_003409.1 + 115769 0.68 0.653736
Target:  5'- -uCUGCCUCCUcugcgagugccuuGCgGCACACCcagaGGCACCc -3'
miRNA:   3'- guGACGGGGGG-------------UG-UGUGUGG----UCGUGG- -5'
13462 3' -59 NC_003409.1 + 31126 0.68 0.634483
Target:  5'- cCGCUGaacccaCCCCCGCcuccaGCACGCagAGCAUCc -3'
miRNA:   3'- -GUGACg-----GGGGGUG-----UGUGUGg-UCGUGG- -5'
13462 3' -59 NC_003409.1 + 36027 0.68 0.633468
Target:  5'- uGCUGUCCCCguCAC-CACgCAGCuuaugguACCg -3'
miRNA:   3'- gUGACGGGGGguGUGuGUG-GUCG-------UGG- -5'
13462 3' -59 NC_003409.1 + 62148 0.68 0.624343
Target:  5'- --aUGCCCCCCuuuaccauUugACuGCCuAGCACCa -3'
miRNA:   3'- gugACGGGGGGu-------GugUG-UGG-UCGUGG- -5'
13462 3' -59 NC_003409.1 + 113369 0.68 0.614209
Target:  5'- aGCUGCUgCgCCGCACAaAUCuGCGCCu -3'
miRNA:   3'- gUGACGGgG-GGUGUGUgUGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 132643 0.68 0.613197
Target:  5'- gGgUGCCCCgagaCGCGgACACCaucggacAGCGCCa -3'
miRNA:   3'- gUgACGGGGg---GUGUgUGUGG-------UCGUGG- -5'
13462 3' -59 NC_003409.1 + 111099 0.68 0.604089
Target:  5'- cCAC-GCCCCCaCACGCcauagACAUUAGC-CCa -3'
miRNA:   3'- -GUGaCGGGGG-GUGUG-----UGUGGUCGuGG- -5'
13462 3' -59 NC_003409.1 + 80583 0.69 0.593989
Target:  5'- gACUGCCCgCaCCAauaaACGCACCGcuCGCCu -3'
miRNA:   3'- gUGACGGG-G-GGUg---UGUGUGGUc-GUGG- -5'
13462 3' -59 NC_003409.1 + 117725 0.69 0.587942
Target:  5'- gGgUGCCCUgguugacacaaugugCCGCGCAUcaACCAGCGCg -3'
miRNA:   3'- gUgACGGGG---------------GGUGUGUG--UGGUCGUGg -5'
13462 3' -59 NC_003409.1 + 110780 0.69 0.573878
Target:  5'- gCACUGCCCgUUAUAuCACccCCAGCACa -3'
miRNA:   3'- -GUGACGGGgGGUGU-GUGu-GGUCGUGg -5'
13462 3' -59 NC_003409.1 + 51037 0.69 0.572877
Target:  5'- gGC-GCCCCCauCACACACgugguauGCCAgGCACUg -3'
miRNA:   3'- gUGaCGGGGG--GUGUGUG-------UGGU-CGUGG- -5'
13462 3' -59 NC_003409.1 + 41124 0.69 0.56388
Target:  5'- aGCUGgCgCCCAuucuCACGgACCAGCACg -3'
miRNA:   3'- gUGACgGgGGGU----GUGUgUGGUCGUGg -5'
13462 3' -59 NC_003409.1 + 106130 0.69 0.56388
Target:  5'- uGCUGCCggaCCUcaaacuGCGCACGCUcguggAGCACCu -3'
miRNA:   3'- gUGACGGg--GGG------UGUGUGUGG-----UCGUGG- -5'
13462 3' -59 NC_003409.1 + 49425 0.69 0.553929
Target:  5'- gACUGCCCUCCAUcccuaagcgggACGCACUugaucGCGCg -3'
miRNA:   3'- gUGACGGGGGGUG-----------UGUGUGGu----CGUGg -5'
13462 3' -59 NC_003409.1 + 79533 0.69 0.553929
Target:  5'- aUugUGCCuCCCCGCACggcguccugGCAaCGGCACa -3'
miRNA:   3'- -GugACGG-GGGGUGUG---------UGUgGUCGUGg -5'
13462 3' -59 NC_003409.1 + 54286 0.7 0.534191
Target:  5'- gCGC-GUCCUCgCGCACACACC-GCAUCu -3'
miRNA:   3'- -GUGaCGGGGG-GUGUGUGUGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 110817 0.7 0.534191
Target:  5'- ---cGCCUauaCCGCAUcUGCCAGCACCg -3'
miRNA:   3'- gugaCGGGg--GGUGUGuGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 90612 0.7 0.524415
Target:  5'- gGCUGaaCCCCAgACGCACUauGGCGCg -3'
miRNA:   3'- gUGACggGGGGUgUGUGUGG--UCGUGg -5'
13462 3' -59 NC_003409.1 + 46598 0.7 0.523441
Target:  5'- -uCUGCCaggcuugcuggggCCCC-CGC-CACCAGCACUa -3'
miRNA:   3'- guGACGG-------------GGGGuGUGuGUGGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.