miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13462 3' -59 NC_003409.1 + 116601 0.67 0.71485
Target:  5'- uCugUGCUUgCUGCugACGCUGGCGCUu -3'
miRNA:   3'- -GugACGGGgGGUGugUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 34116 0.67 0.71485
Target:  5'- aUACUcaaaCCCCCAggaGCGCGCCucgcuGGCGCCu -3'
miRNA:   3'- -GUGAcg--GGGGGUg--UGUGUGG-----UCGUGG- -5'
13462 3' -59 NC_003409.1 + 133212 0.67 0.713864
Target:  5'- gACccgGCCCCgguggugaggcacCUGCAgGCGCUGGCGCCg -3'
miRNA:   3'- gUGa--CGGGG-------------GGUGUgUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 22301 0.67 0.713864
Target:  5'- gACUGCCUUCUggcgacaAUACACGguggacguCCAGUACCa -3'
miRNA:   3'- gUGACGGGGGG-------UGUGUGU--------GGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 127897 0.67 0.704955
Target:  5'- aCugUGCUCCCgguuGCugGCACCGGUucagugguccgACCu -3'
miRNA:   3'- -GugACGGGGGg---UGugUGUGGUCG-----------UGG- -5'
13462 3' -59 NC_003409.1 + 23318 0.67 0.704955
Target:  5'- -uCUGCCCcgcuCCCAUugGucCGCCGGC-CCg -3'
miRNA:   3'- guGACGGG----GGGUGugU--GUGGUCGuGG- -5'
13462 3' -59 NC_003409.1 + 119691 0.67 0.704955
Target:  5'- -uCUGCCCcgcuCCCAUugGucCGCCGGC-CCg -3'
miRNA:   3'- guGACGGG----GGGUGugU--GUGGUCGuGG- -5'
13462 3' -59 NC_003409.1 + 118794 0.67 0.704955
Target:  5'- gACcGaCCCCCCucgcgcauuacGCGCGCGgCGGCACg -3'
miRNA:   3'- gUGaC-GGGGGG-----------UGUGUGUgGUCGUGg -5'
13462 3' -59 NC_003409.1 + 102334 0.67 0.704955
Target:  5'- aAUUGCaaaagauaCUgACACGCGCCAGCGCg -3'
miRNA:   3'- gUGACGgg------GGgUGUGUGUGGUCGUGg -5'
13462 3' -59 NC_003409.1 + 132809 0.67 0.695
Target:  5'- gCACagGCgCgCgGCGCGCugCAGUACCu -3'
miRNA:   3'- -GUGa-CGgGgGgUGUGUGugGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 88144 0.67 0.684993
Target:  5'- -cCUGCUCCaucaACGCugACCGGC-CCu -3'
miRNA:   3'- guGACGGGGgg--UGUGugUGGUCGuGG- -5'
13462 3' -59 NC_003409.1 + 4731 0.67 0.684993
Target:  5'- aCAUUGCCCCUgACACaggucACACauuugacuaGGUGCCg -3'
miRNA:   3'- -GUGACGGGGGgUGUG-----UGUGg--------UCGUGG- -5'
13462 3' -59 NC_003409.1 + 35961 0.67 0.674943
Target:  5'- cCAC-GUCCCCCAUugACgcgucuGCCGGCcuaguuGCCg -3'
miRNA:   3'- -GUGaCGGGGGGUGugUG------UGGUCG------UGG- -5'
13462 3' -59 NC_003409.1 + 51215 0.67 0.674943
Target:  5'- gCACaaUGUCCCguuUCAgACACGCUAGCAUCc -3'
miRNA:   3'- -GUG--ACGGGG---GGUgUGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 131225 0.67 0.674943
Target:  5'- gCACUGCUCCCagGCA-GCACCAacGCgGCCa -3'
miRNA:   3'- -GUGACGGGGGg-UGUgUGUGGU--CG-UGG- -5'
13462 3' -59 NC_003409.1 + 115457 0.67 0.674943
Target:  5'- uGCUGCCagaUUACAgACACCAcCACCg -3'
miRNA:   3'- gUGACGGgg-GGUGUgUGUGGUcGUGG- -5'
13462 3' -59 NC_003409.1 + 116587 0.67 0.674943
Target:  5'- uGCUGCCCCuagaccugucuaCCGuCGCAC-CCGGcCGCUg -3'
miRNA:   3'- gUGACGGGG------------GGU-GUGUGuGGUC-GUGG- -5'
13462 3' -59 NC_003409.1 + 87467 0.67 0.664858
Target:  5'- -uCUGUagaugCCCCGCAaGCGCCuucGGCACCg -3'
miRNA:   3'- guGACGg----GGGGUGUgUGUGG---UCGUGG- -5'
13462 3' -59 NC_003409.1 + 87776 0.67 0.663848
Target:  5'- uGCUGCCCCcaguuggauuccgCCGCACGC-CCAaGCGg- -3'
miRNA:   3'- gUGACGGGG-------------GGUGUGUGuGGU-CGUgg -5'
13462 3' -59 NC_003409.1 + 12118 0.68 0.654748
Target:  5'- ---gGCCCCCCGCACccAgGCCAGagACUc -3'
miRNA:   3'- gugaCGGGGGGUGUG--UgUGGUCg-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.