Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13462 | 3' | -59 | NC_003409.1 | + | 127897 | 0.67 | 0.704955 |
Target: 5'- aCugUGCUCCCgguuGCugGCACCGGUucagugguccgACCu -3' miRNA: 3'- -GugACGGGGGg---UGugUGUGGUCG-----------UGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 131225 | 0.67 | 0.674943 |
Target: 5'- gCACUGCUCCCagGCA-GCACCAacGCgGCCa -3' miRNA: 3'- -GUGACGGGGGg-UGUgUGUGGU--CG-UGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 115457 | 0.67 | 0.674943 |
Target: 5'- uGCUGCCagaUUACAgACACCAcCACCg -3' miRNA: 3'- gUGACGGgg-GGUGUgUGUGGUcGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 22301 | 0.67 | 0.713864 |
Target: 5'- gACUGCCUUCUggcgacaAUACACGguggacguCCAGUACCa -3' miRNA: 3'- gUGACGGGGGG-------UGUGUGU--------GGUCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 87467 | 0.67 | 0.664858 |
Target: 5'- -uCUGUagaugCCCCGCAaGCGCCuucGGCACCg -3' miRNA: 3'- guGACGg----GGGGUGUgUGUGG---UCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 23318 | 0.67 | 0.704955 |
Target: 5'- -uCUGCCCcgcuCCCAUugGucCGCCGGC-CCg -3' miRNA: 3'- guGACGGG----GGGUGugU--GUGGUCGuGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 116587 | 0.67 | 0.674943 |
Target: 5'- uGCUGCCCCuagaccugucuaCCGuCGCAC-CCGGcCGCUg -3' miRNA: 3'- gUGACGGGG------------GGU-GUGUGuGGUC-GUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 4731 | 0.67 | 0.684993 |
Target: 5'- aCAUUGCCCCUgACACaggucACACauuugacuaGGUGCCg -3' miRNA: 3'- -GUGACGGGGGgUGUG-----UGUGg--------UCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 132809 | 0.67 | 0.695 |
Target: 5'- gCACagGCgCgCgGCGCGCugCAGUACCu -3' miRNA: 3'- -GUGa-CGgGgGgUGUGUGugGUCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 35961 | 0.67 | 0.674943 |
Target: 5'- cCAC-GUCCCCCAUugACgcgucuGCCGGCcuaguuGCCg -3' miRNA: 3'- -GUGaCGGGGGGUGugUG------UGGUCG------UGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 88144 | 0.67 | 0.684993 |
Target: 5'- -cCUGCUCCaucaACGCugACCGGC-CCu -3' miRNA: 3'- guGACGGGGgg--UGUGugUGGUCGuGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 87776 | 0.67 | 0.663848 |
Target: 5'- uGCUGCCCCcaguuggauuccgCCGCACGC-CCAaGCGg- -3' miRNA: 3'- gUGACGGGG-------------GGUGUGUGuGGU-CGUgg -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 119691 | 0.67 | 0.704955 |
Target: 5'- -uCUGCCCcgcuCCCAUugGucCGCCGGC-CCg -3' miRNA: 3'- guGACGGG----GGGUGugU--GUGGUCGuGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 118794 | 0.67 | 0.704955 |
Target: 5'- gACcGaCCCCCCucgcgcauuacGCGCGCGgCGGCACg -3' miRNA: 3'- gUGaC-GGGGGG-----------UGUGUGUgGUCGUGg -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 133212 | 0.67 | 0.713864 |
Target: 5'- gACccgGCCCCgguggugaggcacCUGCAgGCGCUGGCGCCg -3' miRNA: 3'- gUGa--CGGGG-------------GGUGUgUGUGGUCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 116601 | 0.67 | 0.71485 |
Target: 5'- uCugUGCUUgCUGCugACGCUGGCGCUu -3' miRNA: 3'- -GugACGGGgGGUGugUGUGGUCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 34116 | 0.67 | 0.71485 |
Target: 5'- aUACUcaaaCCCCCAggaGCGCGCCucgcuGGCGCCu -3' miRNA: 3'- -GUGAcg--GGGGGUg--UGUGUGG-----UCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 102334 | 0.67 | 0.704955 |
Target: 5'- aAUUGCaaaagauaCUgACACGCGCCAGCGCg -3' miRNA: 3'- gUGACGgg------GGgUGUGUGUGGUCGUGg -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 51215 | 0.67 | 0.674943 |
Target: 5'- gCACaaUGUCCCguuUCAgACACGCUAGCAUCc -3' miRNA: 3'- -GUG--ACGGGG---GGUgUGUGUGGUCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 132643 | 0.68 | 0.613197 |
Target: 5'- gGgUGCCCCgagaCGCGgACACCaucggacAGCGCCa -3' miRNA: 3'- gUgACGGGGg---GUGUgUGUGG-------UCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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