miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13462 3' -59 NC_003409.1 + 111099 0.68 0.604089
Target:  5'- cCAC-GCCCCCaCACGCcauagACAUUAGC-CCa -3'
miRNA:   3'- -GUGaCGGGGG-GUGUG-----UGUGGUCGuGG- -5'
13462 3' -59 NC_003409.1 + 110780 0.69 0.573878
Target:  5'- gCACUGCCCgUUAUAuCACccCCAGCACa -3'
miRNA:   3'- -GUGACGGGgGGUGU-GUGu-GGUCGUGg -5'
13462 3' -59 NC_003409.1 + 45740 0.7 0.514707
Target:  5'- ---gGCCaCCCCGgGCGcCAUUAGCGCCa -3'
miRNA:   3'- gugaCGG-GGGGUgUGU-GUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 11801 0.72 0.413688
Target:  5'- gCGCUGCUaCUUC-UACACACUAGCACCc -3'
miRNA:   3'- -GUGACGG-GGGGuGUGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 23318 0.67 0.704955
Target:  5'- -uCUGCCCcgcuCCCAUugGucCGCCGGC-CCg -3'
miRNA:   3'- guGACGGG----GGGUGugU--GUGGUCGuGG- -5'
13462 3' -59 NC_003409.1 + 115769 0.68 0.653736
Target:  5'- -uCUGCCUCCUcugcgagugccuuGCgGCACACCcagaGGCACCc -3'
miRNA:   3'- guGACGGGGGG-------------UG-UGUGUGG----UCGUGG- -5'
13462 3' -59 NC_003409.1 + 79533 0.69 0.553929
Target:  5'- aUugUGCCuCCCCGCACggcguccugGCAaCGGCACa -3'
miRNA:   3'- -GugACGG-GGGGUGUG---------UGUgGUCGUGg -5'
13462 3' -59 NC_003409.1 + 33826 0.72 0.396656
Target:  5'- gCGCUGUCCCUgGCGCGC-CC-GUACCc -3'
miRNA:   3'- -GUGACGGGGGgUGUGUGuGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 36027 0.68 0.633468
Target:  5'- uGCUGUCCCCguCAC-CACgCAGCuuaugguACCg -3'
miRNA:   3'- gUGACGGGGGguGUGuGUG-GUCG-------UGG- -5'
13462 3' -59 NC_003409.1 + 110115 0.73 0.37197
Target:  5'- cCAUUcGCCUCCCugGC-CGCC-GCACCa -3'
miRNA:   3'- -GUGA-CGGGGGGugUGuGUGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 106130 0.69 0.56388
Target:  5'- uGCUGCCggaCCUcaaacuGCGCACGCUcguggAGCACCu -3'
miRNA:   3'- gUGACGGg--GGG------UGUGUGUGG-----UCGUGG- -5'
13462 3' -59 NC_003409.1 + 132643 0.68 0.613197
Target:  5'- gGgUGCCCCgagaCGCGgACACCaucggacAGCGCCa -3'
miRNA:   3'- gUgACGGGGg---GUGUgUGUGG-------UCGUGG- -5'
13462 3' -59 NC_003409.1 + 110817 0.7 0.534191
Target:  5'- ---cGCCUauaCCGCAUcUGCCAGCACCg -3'
miRNA:   3'- gugaCGGGg--GGUGUGuGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 46598 0.7 0.523441
Target:  5'- -uCUGCCaggcuugcuggggCCCC-CGC-CACCAGCACUa -3'
miRNA:   3'- guGACGG-------------GGGGuGUGuGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 46771 0.7 0.505074
Target:  5'- aCAC-GCCCCaguaCACAUGgGCCAGUAUCu -3'
miRNA:   3'- -GUGaCGGGGg---GUGUGUgUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 84854 0.72 0.431163
Target:  5'- aCGCUuuCCCCUCACugGCACCGGUAg- -3'
miRNA:   3'- -GUGAc-GGGGGGUGugUGUGGUCGUgg -5'
13462 3' -59 NC_003409.1 + 81939 0.66 0.734424
Target:  5'- uCACUuCCCCCCACAUuccCcCCGuGCACa -3'
miRNA:   3'- -GUGAcGGGGGGUGUGu--GuGGU-CGUGg -5'
13462 3' -59 NC_003409.1 + 102334 0.67 0.704955
Target:  5'- aAUUGCaaaagauaCUgACACGCGCCAGCGCg -3'
miRNA:   3'- gUGACGgg------GGgUGUGUGUGGUCGUGg -5'
13462 3' -59 NC_003409.1 + 115457 0.67 0.674943
Target:  5'- uGCUGCCagaUUACAgACACCAcCACCg -3'
miRNA:   3'- gUGACGGgg-GGUGUgUGUGGUcGUGG- -5'
13462 3' -59 NC_003409.1 + 12118 0.68 0.654748
Target:  5'- ---gGCCCCCCGCACccAgGCCAGagACUc -3'
miRNA:   3'- gugaCGGGGGGUGUG--UgUGGUCg-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.