miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13462 3' -59 NC_003409.1 + 123587 1.1 0.001023
Target:  5'- aCACUGCCCCCCACACACACCAGCACCc -3'
miRNA:   3'- -GUGACGGGGGGUGUGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 110817 0.7 0.534191
Target:  5'- ---cGCCUauaCCGCAUcUGCCAGCACCg -3'
miRNA:   3'- gugaCGGGg--GGUGUGuGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 79533 0.69 0.553929
Target:  5'- aUugUGCCuCCCCGCACggcguccugGCAaCGGCACa -3'
miRNA:   3'- -GugACGG-GGGGUGUG---------UGUgGUCGUGg -5'
13462 3' -59 NC_003409.1 + 81384 0.66 0.772453
Target:  5'- aACUGCUCCaUCACucccCGgGCCacAGCGCCg -3'
miRNA:   3'- gUGACGGGG-GGUGu---GUgUGG--UCGUGG- -5'
13462 3' -59 NC_003409.1 + 110115 0.73 0.37197
Target:  5'- cCAUUcGCCUCCCugGC-CGCC-GCACCa -3'
miRNA:   3'- -GUGA-CGGGGGGugUGuGUGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 33826 0.72 0.396656
Target:  5'- gCGCUGUCCCUgGCGCGC-CC-GUACCc -3'
miRNA:   3'- -GUGACGGGGGgUGUGUGuGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 84854 0.72 0.431163
Target:  5'- aCGCUuuCCCCUCACugGCACCGGUAg- -3'
miRNA:   3'- -GUGAc-GGGGGGUGugUGUGGUCGUgg -5'
13462 3' -59 NC_003409.1 + 127743 0.71 0.437381
Target:  5'- gCGCUGCCUCCaaaugaUACACACAUUuuuugauugucccgGGCGCCg -3'
miRNA:   3'- -GUGACGGGGG------GUGUGUGUGG--------------UCGUGG- -5'
13462 3' -59 NC_003409.1 + 96479 0.7 0.514707
Target:  5'- aGCUG-UCCCCACGCugGaCAGCACa -3'
miRNA:   3'- gUGACgGGGGGUGUGugUgGUCGUGg -5'
13462 3' -59 NC_003409.1 + 54286 0.7 0.534191
Target:  5'- gCGC-GUCCUCgCGCACACACC-GCAUCu -3'
miRNA:   3'- -GUGaCGGGGG-GUGUGUGUGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 45740 0.7 0.514707
Target:  5'- ---gGCCaCCCCGgGCGcCAUUAGCGCCa -3'
miRNA:   3'- gugaCGG-GGGGUgUGU-GUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 46771 0.7 0.505074
Target:  5'- aCAC-GCCCCaguaCACAUGgGCCAGUAUCu -3'
miRNA:   3'- -GUGaCGGGGg---GUGUGUgUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 110006 0.78 0.179575
Target:  5'- cCGC-GCCCCCCuACGCAUuuUCAGCACCg -3'
miRNA:   3'- -GUGaCGGGGGG-UGUGUGu-GGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 46598 0.7 0.523441
Target:  5'- -uCUGCCaggcuugcuggggCCCC-CGC-CACCAGCACUa -3'
miRNA:   3'- guGACGG-------------GGGGuGUGuGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 97015 0.75 0.258648
Target:  5'- uCACUGCCUCCCugAacaGCGCCuGgACCu -3'
miRNA:   3'- -GUGACGGGGGGugUg--UGUGGuCgUGG- -5'
13462 3' -59 NC_003409.1 + 110963 0.71 0.467367
Target:  5'- gCGCUccaGCCCCCC-CGgACugagggcgaagGCCGGCGCCc -3'
miRNA:   3'- -GUGA---CGGGGGGuGUgUG-----------UGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 90612 0.7 0.524415
Target:  5'- gGCUGaaCCCCAgACGCACUauGGCGCg -3'
miRNA:   3'- gUGACggGGGGUgUGUGUGG--UCGUGg -5'
13462 3' -59 NC_003409.1 + 49425 0.69 0.553929
Target:  5'- gACUGCCCUCCAUcccuaagcgggACGCACUugaucGCGCg -3'
miRNA:   3'- gUGACGGGGGGUG-----------UGUGUGGu----CGUGg -5'
13462 3' -59 NC_003409.1 + 24192 0.73 0.348351
Target:  5'- aGCaGCCCCCCcucgcgcacugcGCGCGCGgCGGCACg -3'
miRNA:   3'- gUGaCGGGGGG------------UGUGUGUgGUCGUGg -5'
13462 3' -59 NC_003409.1 + 11801 0.72 0.413688
Target:  5'- gCGCUGCUaCUUC-UACACACUAGCACCc -3'
miRNA:   3'- -GUGACGG-GGGGuGUGUGUGGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.