miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13462 3' -59 NC_003409.1 + 117725 0.69 0.587942
Target:  5'- gGgUGCCCUgguugacacaaugugCCGCGCAUcaACCAGCGCg -3'
miRNA:   3'- gUgACGGGG---------------GGUGUGUG--UGGUCGUGg -5'
13462 3' -59 NC_003409.1 + 88144 0.67 0.684993
Target:  5'- -cCUGCUCCaucaACGCugACCGGC-CCu -3'
miRNA:   3'- guGACGGGGgg--UGUGugUGGUCGuGG- -5'
13462 3' -59 NC_003409.1 + 4731 0.67 0.684993
Target:  5'- aCAUUGCCCCUgACACaggucACACauuugacuaGGUGCCg -3'
miRNA:   3'- -GUGACGGGGGgUGUG-----UGUGg--------UCGUGG- -5'
13462 3' -59 NC_003409.1 + 35961 0.67 0.674943
Target:  5'- cCAC-GUCCCCCAUugACgcgucuGCCGGCcuaguuGCCg -3'
miRNA:   3'- -GUGaCGGGGGGUGugUG------UGGUCG------UGG- -5'
13462 3' -59 NC_003409.1 + 51215 0.67 0.674943
Target:  5'- gCACaaUGUCCCguuUCAgACACGCUAGCAUCc -3'
miRNA:   3'- -GUG--ACGGGG---GGUgUGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 87776 0.67 0.663848
Target:  5'- uGCUGCCCCcaguuggauuccgCCGCACGC-CCAaGCGg- -3'
miRNA:   3'- gUGACGGGG-------------GGUGUGUGuGGU-CGUgg -5'
13462 3' -59 NC_003409.1 + 127946 0.68 0.654748
Target:  5'- aACUccGCCCUCCAC-UACGC-GGCGCCc -3'
miRNA:   3'- gUGA--CGGGGGGUGuGUGUGgUCGUGG- -5'
13462 3' -59 NC_003409.1 + 31126 0.68 0.634483
Target:  5'- cCGCUGaacccaCCCCCGCcuccaGCACGCagAGCAUCc -3'
miRNA:   3'- -GUGACg-----GGGGGUG-----UGUGUGg-UCGUGG- -5'
13462 3' -59 NC_003409.1 + 80583 0.69 0.593989
Target:  5'- gACUGCCCgCaCCAauaaACGCACCGcuCGCCu -3'
miRNA:   3'- gUGACGGG-G-GGUg---UGUGUGGUc-GUGG- -5'
13462 3' -59 NC_003409.1 + 119691 0.67 0.704955
Target:  5'- -uCUGCCCcgcuCCCAUugGucCGCCGGC-CCg -3'
miRNA:   3'- guGACGGG----GGGUGugU--GUGGUCGuGG- -5'
13462 3' -59 NC_003409.1 + 118794 0.67 0.704955
Target:  5'- gACcGaCCCCCCucgcgcauuacGCGCGCGgCGGCACg -3'
miRNA:   3'- gUGaC-GGGGGG-----------UGUGUGUgGUCGUGg -5'
13462 3' -59 NC_003409.1 + 133212 0.67 0.713864
Target:  5'- gACccgGCCCCgguggugaggcacCUGCAgGCGCUGGCGCCg -3'
miRNA:   3'- gUGa--CGGGG-------------GGUGUgUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 42444 0.66 0.753649
Target:  5'- uCGCUGUaucUUCCCGCGCuacuaACguGCACCa -3'
miRNA:   3'- -GUGACG---GGGGGUGUGug---UGguCGUGG- -5'
13462 3' -59 NC_003409.1 + 43714 0.66 0.744084
Target:  5'- aCGCUGUCCgUCGucucCGgACGCCGGcCACCu -3'
miRNA:   3'- -GUGACGGGgGGU----GUgUGUGGUC-GUGG- -5'
13462 3' -59 NC_003409.1 + 131368 0.66 0.744084
Target:  5'- gCAgUGCCCCgUACGCGCucaugGCCGcGUugCa -3'
miRNA:   3'- -GUgACGGGGgGUGUGUG-----UGGU-CGugG- -5'
13462 3' -59 NC_003409.1 + 97714 0.66 0.734424
Target:  5'- --aUGUUUCCCACGUGCACCAGCucagcgauGCCg -3'
miRNA:   3'- gugACGGGGGGUGUGUGUGGUCG--------UGG- -5'
13462 3' -59 NC_003409.1 + 50724 0.66 0.724676
Target:  5'- cCACUgGCUCaCCCAUACG-AUCGGCACa -3'
miRNA:   3'- -GUGA-CGGG-GGGUGUGUgUGGUCGUGg -5'
13462 3' -59 NC_003409.1 + 47477 0.66 0.723697
Target:  5'- aGCUGCUgcagaauagcgugCCCCAguUGCugCGGCACg -3'
miRNA:   3'- gUGACGG-------------GGGGUguGUGugGUCGUGg -5'
13462 3' -59 NC_003409.1 + 34116 0.67 0.71485
Target:  5'- aUACUcaaaCCCCCAggaGCGCGCCucgcuGGCGCCu -3'
miRNA:   3'- -GUGAcg--GGGGGUg--UGUGUGG-----UCGUGG- -5'
13462 3' -59 NC_003409.1 + 116601 0.67 0.71485
Target:  5'- uCugUGCUUgCUGCugACGCUGGCGCUu -3'
miRNA:   3'- -GugACGGGgGGUGugUGUGGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.