miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13462 3' -59 NC_003409.1 + 123587 1.1 0.001023
Target:  5'- aCACUGCCCCCCACACACACCAGCACCc -3'
miRNA:   3'- -GUGACGGGGGGUGUGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 110006 0.78 0.179575
Target:  5'- cCGC-GCCCCCCuACGCAUuuUCAGCACCg -3'
miRNA:   3'- -GUGaCGGGGGG-UGUGUGu-GGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 97015 0.75 0.258648
Target:  5'- uCACUGCCUCCCugAacaGCGCCuGgACCu -3'
miRNA:   3'- -GUGACGGGGGGugUg--UGUGGuCgUGG- -5'
13462 3' -59 NC_003409.1 + 97006 0.75 0.284064
Target:  5'- aGCgUGCCCCCUcuCAUACACCGGCAg- -3'
miRNA:   3'- gUG-ACGGGGGGu-GUGUGUGGUCGUgg -5'
13462 3' -59 NC_003409.1 + 131237 0.74 0.325823
Target:  5'- gGCUGCCaggCCAgcUACGCCAGCGCCa -3'
miRNA:   3'- gUGACGGgg-GGUguGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 24192 0.73 0.348351
Target:  5'- aGCaGCCCCCCcucgcgcacugcGCGCGCGgCGGCACg -3'
miRNA:   3'- gUGaCGGGGGG------------UGUGUGUgGUCGUGg -5'
13462 3' -59 NC_003409.1 + 110115 0.73 0.37197
Target:  5'- cCAUUcGCCUCCCugGC-CGCC-GCACCa -3'
miRNA:   3'- -GUGA-CGGGGGGugUGuGUGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 41840 0.73 0.380082
Target:  5'- gACUGCaCCCCUGCGCAaACUuuuuaGGCACCc -3'
miRNA:   3'- gUGACG-GGGGGUGUGUgUGG-----UCGUGG- -5'
13462 3' -59 NC_003409.1 + 95712 0.72 0.396656
Target:  5'- aGCUGCCCCCCA-GCGgCGCCaacuaaggacAGCACa -3'
miRNA:   3'- gUGACGGGGGGUgUGU-GUGG----------UCGUGg -5'
13462 3' -59 NC_003409.1 + 33826 0.72 0.396656
Target:  5'- gCGCUGUCCCUgGCGCGC-CC-GUACCc -3'
miRNA:   3'- -GUGACGGGGGgUGUGUGuGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 42866 0.72 0.405115
Target:  5'- gCGCUcgaggGCCCCCUACuACugcCACCgAGCGCCu -3'
miRNA:   3'- -GUGA-----CGGGGGGUG-UGu--GUGG-UCGUGG- -5'
13462 3' -59 NC_003409.1 + 11801 0.72 0.413688
Target:  5'- gCGCUGCUaCUUC-UACACACUAGCACCc -3'
miRNA:   3'- -GUGACGG-GGGGuGUGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 118637 0.72 0.413688
Target:  5'- gCGCgGUCCCCCGCACcccGCACCccaggaacccGGCGCg -3'
miRNA:   3'- -GUGaCGGGGGGUGUG---UGUGG----------UCGUGg -5'
13462 3' -59 NC_003409.1 + 11940 0.72 0.421498
Target:  5'- gCGCUGCCUgaaaacgUUCACGCagACACUGGCGCCa -3'
miRNA:   3'- -GUGACGGG-------GGGUGUG--UGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 34596 0.72 0.422371
Target:  5'- gACauCCCCCC-CGCAgGCCAGcCACCg -3'
miRNA:   3'- gUGacGGGGGGuGUGUgUGGUC-GUGG- -5'
13462 3' -59 NC_003409.1 + 122755 0.72 0.422371
Target:  5'- uCGgUGCCUUCaCAUAUACaaGCCGGCACCa -3'
miRNA:   3'- -GUgACGGGGG-GUGUGUG--UGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 84854 0.72 0.431163
Target:  5'- aCGCUuuCCCCUCACugGCACCGGUAg- -3'
miRNA:   3'- -GUGAc-GGGGGGUGugUGUGGUCGUgg -5'
13462 3' -59 NC_003409.1 + 127743 0.71 0.437381
Target:  5'- gCGCUGCCUCCaaaugaUACACACAUUuuuugauugucccgGGCGCCg -3'
miRNA:   3'- -GUGACGGGGG------GUGUGUGUGG--------------UCGUGG- -5'
13462 3' -59 NC_003409.1 + 87331 0.71 0.440062
Target:  5'- cCAC-GCCCUCCGCcgGCGCACCAccCACCc -3'
miRNA:   3'- -GUGaCGGGGGGUG--UGUGUGGUc-GUGG- -5'
13462 3' -59 NC_003409.1 + 70375 0.71 0.440062
Target:  5'- gCACUacucgggaCCCCCGCGCACcCCGGCAUa -3'
miRNA:   3'- -GUGAcg------GGGGGUGUGUGuGGUCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.