miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13462 3' -59 NC_003409.1 + 87331 0.71 0.440062
Target:  5'- cCAC-GCCCUCCGCcgGCGCACCAccCACCc -3'
miRNA:   3'- -GUGaCGGGGGGUG--UGUGUGGUc-GUGG- -5'
13462 3' -59 NC_003409.1 + 110963 0.71 0.467367
Target:  5'- gCGCUccaGCCCCCC-CGgACugagggcgaagGCCGGCGCCc -3'
miRNA:   3'- -GUGA---CGGGGGGuGUgUG-----------UGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 67966 0.71 0.467367
Target:  5'- gGC-GCCCCCU--GCGCGCC-GCACCc -3'
miRNA:   3'- gUGaCGGGGGGugUGUGUGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 78981 0.71 0.486047
Target:  5'- gUAUUGCCUCUCACGCcUGCCGuuacGCGCCa -3'
miRNA:   3'- -GUGACGGGGGGUGUGuGUGGU----CGUGG- -5'
13462 3' -59 NC_003409.1 + 26102 0.7 0.505074
Target:  5'- gUACUGCCauaCCgACGgcCGCGCCGGCcaACCg -3'
miRNA:   3'- -GUGACGGg--GGgUGU--GUGUGGUCG--UGG- -5'
13462 3' -59 NC_003409.1 + 46771 0.7 0.505074
Target:  5'- aCAC-GCCCCaguaCACAUGgGCCAGUAUCu -3'
miRNA:   3'- -GUGaCGGGGg---GUGUGUgUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 45740 0.7 0.514707
Target:  5'- ---gGCCaCCCCGgGCGcCAUUAGCGCCa -3'
miRNA:   3'- gugaCGG-GGGGUgUGU-GUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 132296 0.7 0.514707
Target:  5'- cCAUUGCCugaCCCCuC-CACGCUGGCACUg -3'
miRNA:   3'- -GUGACGG---GGGGuGuGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 96479 0.7 0.514707
Target:  5'- aGCUG-UCCCCACGCugGaCAGCACa -3'
miRNA:   3'- gUGACgGGGGGUGUGugUgGUCGUGg -5'
13462 3' -59 NC_003409.1 + 46598 0.7 0.523441
Target:  5'- -uCUGCCaggcuugcuggggCCCC-CGC-CACCAGCACUa -3'
miRNA:   3'- guGACGG-------------GGGGuGUGuGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 90612 0.7 0.524415
Target:  5'- gGCUGaaCCCCAgACGCACUauGGCGCg -3'
miRNA:   3'- gUGACggGGGGUgUGUGUGG--UCGUGg -5'
13462 3' -59 NC_003409.1 + 110817 0.7 0.534191
Target:  5'- ---cGCCUauaCCGCAUcUGCCAGCACCg -3'
miRNA:   3'- gugaCGGGg--GGUGUGuGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 54286 0.7 0.534191
Target:  5'- gCGC-GUCCUCgCGCACACACC-GCAUCu -3'
miRNA:   3'- -GUGaCGGGGG-GUGUGUGUGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 49425 0.69 0.553929
Target:  5'- gACUGCCCUCCAUcccuaagcgggACGCACUugaucGCGCg -3'
miRNA:   3'- gUGACGGGGGGUG-----------UGUGUGGu----CGUGg -5'
13462 3' -59 NC_003409.1 + 79533 0.69 0.553929
Target:  5'- aUugUGCCuCCCCGCACggcguccugGCAaCGGCACa -3'
miRNA:   3'- -GugACGG-GGGGUGUG---------UGUgGUCGUGg -5'
13462 3' -59 NC_003409.1 + 41124 0.69 0.56388
Target:  5'- aGCUGgCgCCCAuucuCACGgACCAGCACg -3'
miRNA:   3'- gUGACgGgGGGU----GUGUgUGGUCGUGg -5'
13462 3' -59 NC_003409.1 + 106130 0.69 0.56388
Target:  5'- uGCUGCCggaCCUcaaacuGCGCACGCUcguggAGCACCu -3'
miRNA:   3'- gUGACGGg--GGG------UGUGUGUGG-----UCGUGG- -5'
13462 3' -59 NC_003409.1 + 51037 0.69 0.572877
Target:  5'- gGC-GCCCCCauCACACACgugguauGCCAgGCACUg -3'
miRNA:   3'- gUGaCGGGGG--GUGUGUG-------UGGU-CGUGG- -5'
13462 3' -59 NC_003409.1 + 110780 0.69 0.573878
Target:  5'- gCACUGCCCgUUAUAuCACccCCAGCACa -3'
miRNA:   3'- -GUGACGGGgGGUGU-GUGu-GGUCGUGg -5'
13462 3' -59 NC_003409.1 + 117725 0.69 0.587942
Target:  5'- gGgUGCCCUgguugacacaaugugCCGCGCAUcaACCAGCGCg -3'
miRNA:   3'- gUgACGGGG---------------GGUGUGUG--UGGUCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.