miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13462 3' -59 NC_003409.1 + 42444 0.66 0.753649
Target:  5'- uCGCUGUaucUUCCCGCGCuacuaACguGCACCa -3'
miRNA:   3'- -GUGACG---GGGGGUGUGug---UGguCGUGG- -5'
13462 3' -59 NC_003409.1 + 42866 0.72 0.405115
Target:  5'- gCGCUcgaggGCCCCCUACuACugcCACCgAGCGCCu -3'
miRNA:   3'- -GUGA-----CGGGGGGUG-UGu--GUGG-UCGUGG- -5'
13462 3' -59 NC_003409.1 + 43714 0.66 0.744084
Target:  5'- aCGCUGUCCgUCGucucCGgACGCCGGcCACCu -3'
miRNA:   3'- -GUGACGGGgGGU----GUgUGUGGUC-GUGG- -5'
13462 3' -59 NC_003409.1 + 45740 0.7 0.514707
Target:  5'- ---gGCCaCCCCGgGCGcCAUUAGCGCCa -3'
miRNA:   3'- gugaCGG-GGGGUgUGU-GUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 46598 0.7 0.523441
Target:  5'- -uCUGCCaggcuugcuggggCCCC-CGC-CACCAGCACUa -3'
miRNA:   3'- guGACGG-------------GGGGuGUGuGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 46771 0.7 0.505074
Target:  5'- aCAC-GCCCCaguaCACAUGgGCCAGUAUCu -3'
miRNA:   3'- -GUGaCGGGGg---GUGUGUgUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 47477 0.66 0.723697
Target:  5'- aGCUGCUgcagaauagcgugCCCCAguUGCugCGGCACg -3'
miRNA:   3'- gUGACGG-------------GGGGUguGUGugGUCGUGg -5'
13462 3' -59 NC_003409.1 + 49425 0.69 0.553929
Target:  5'- gACUGCCCUCCAUcccuaagcgggACGCACUugaucGCGCg -3'
miRNA:   3'- gUGACGGGGGGUG-----------UGUGUGGu----CGUGg -5'
13462 3' -59 NC_003409.1 + 50724 0.66 0.724676
Target:  5'- cCACUgGCUCaCCCAUACG-AUCGGCACa -3'
miRNA:   3'- -GUGA-CGGG-GGGUGUGUgUGGUCGUGg -5'
13462 3' -59 NC_003409.1 + 51037 0.69 0.572877
Target:  5'- gGC-GCCCCCauCACACACgugguauGCCAgGCACUg -3'
miRNA:   3'- gUGaCGGGGG--GUGUGUG-------UGGU-CGUGG- -5'
13462 3' -59 NC_003409.1 + 51215 0.67 0.674943
Target:  5'- gCACaaUGUCCCguuUCAgACACGCUAGCAUCc -3'
miRNA:   3'- -GUG--ACGGGG---GGUgUGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 54286 0.7 0.534191
Target:  5'- gCGC-GUCCUCgCGCACACACC-GCAUCu -3'
miRNA:   3'- -GUGaCGGGGG-GUGUGUGUGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 62148 0.68 0.624343
Target:  5'- --aUGCCCCCCuuuaccauUugACuGCCuAGCACCa -3'
miRNA:   3'- gugACGGGGGGu-------GugUG-UGG-UCGUGG- -5'
13462 3' -59 NC_003409.1 + 67966 0.71 0.467367
Target:  5'- gGC-GCCCCCU--GCGCGCC-GCACCc -3'
miRNA:   3'- gUGaCGGGGGGugUGUGUGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 70375 0.71 0.440062
Target:  5'- gCACUacucgggaCCCCCGCGCACcCCGGCAUa -3'
miRNA:   3'- -GUGAcg------GGGGGUGUGUGuGGUCGUGg -5'
13462 3' -59 NC_003409.1 + 78981 0.71 0.486047
Target:  5'- gUAUUGCCUCUCACGCcUGCCGuuacGCGCCa -3'
miRNA:   3'- -GUGACGGGGGGUGUGuGUGGU----CGUGG- -5'
13462 3' -59 NC_003409.1 + 79533 0.69 0.553929
Target:  5'- aUugUGCCuCCCCGCACggcguccugGCAaCGGCACa -3'
miRNA:   3'- -GugACGG-GGGGUGUG---------UGUgGUCGUGg -5'
13462 3' -59 NC_003409.1 + 80583 0.69 0.593989
Target:  5'- gACUGCCCgCaCCAauaaACGCACCGcuCGCCu -3'
miRNA:   3'- gUGACGGG-G-GGUg---UGUGUGGUc-GUGG- -5'
13462 3' -59 NC_003409.1 + 81384 0.66 0.772453
Target:  5'- aACUGCUCCaUCACucccCGgGCCacAGCGCCg -3'
miRNA:   3'- gUGACGGGG-GGUGu---GUgUGG--UCGUGG- -5'
13462 3' -59 NC_003409.1 + 81939 0.66 0.734424
Target:  5'- uCACUuCCCCCCACAUuccCcCCGuGCACa -3'
miRNA:   3'- -GUGAcGGGGGGUGUGu--GuGGU-CGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.