miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13462 3' -59 NC_003409.1 + 4731 0.67 0.684993
Target:  5'- aCAUUGCCCCUgACACaggucACACauuugacuaGGUGCCg -3'
miRNA:   3'- -GUGACGGGGGgUGUG-----UGUGg--------UCGUGG- -5'
13462 3' -59 NC_003409.1 + 11801 0.72 0.413688
Target:  5'- gCGCUGCUaCUUC-UACACACUAGCACCc -3'
miRNA:   3'- -GUGACGG-GGGGuGUGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 11940 0.72 0.421498
Target:  5'- gCGCUGCCUgaaaacgUUCACGCagACACUGGCGCCa -3'
miRNA:   3'- -GUGACGGG-------GGGUGUG--UGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 12118 0.68 0.654748
Target:  5'- ---gGCCCCCCGCACccAgGCCAGagACUc -3'
miRNA:   3'- gugaCGGGGGGUGUG--UgUGGUCg-UGG- -5'
13462 3' -59 NC_003409.1 + 21354 0.66 0.744084
Target:  5'- gUugUGCCUUCCG-ACAC-CCcGCGCCg -3'
miRNA:   3'- -GugACGGGGGGUgUGUGuGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 22301 0.67 0.713864
Target:  5'- gACUGCCUUCUggcgacaAUACACGguggacguCCAGUACCa -3'
miRNA:   3'- gUGACGGGGGG-------UGUGUGU--------GGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 22464 0.66 0.763108
Target:  5'- aGCaGCCCCaaaugugCGCGCaACACCcAGCACa -3'
miRNA:   3'- gUGaCGGGGg------GUGUG-UGUGG-UCGUGg -5'
13462 3' -59 NC_003409.1 + 23318 0.67 0.704955
Target:  5'- -uCUGCCCcgcuCCCAUugGucCGCCGGC-CCg -3'
miRNA:   3'- guGACGGG----GGGUGugU--GUGGUCGuGG- -5'
13462 3' -59 NC_003409.1 + 24192 0.73 0.348351
Target:  5'- aGCaGCCCCCCcucgcgcacugcGCGCGCGgCGGCACg -3'
miRNA:   3'- gUGaCGGGGGG------------UGUGUGUgGUCGUGg -5'
13462 3' -59 NC_003409.1 + 24248 0.66 0.759337
Target:  5'- aGCUGCCCauguaggcguuagCCACccauguucugggGCGCGCCAGCGgUg -3'
miRNA:   3'- gUGACGGGg------------GGUG------------UGUGUGGUCGUgG- -5'
13462 3' -59 NC_003409.1 + 26102 0.7 0.505074
Target:  5'- gUACUGCCauaCCgACGgcCGCGCCGGCcaACCg -3'
miRNA:   3'- -GUGACGGg--GGgUGU--GUGUGGUCG--UGG- -5'
13462 3' -59 NC_003409.1 + 31126 0.68 0.634483
Target:  5'- cCGCUGaacccaCCCCCGCcuccaGCACGCagAGCAUCc -3'
miRNA:   3'- -GUGACg-----GGGGGUG-----UGUGUGg-UCGUGG- -5'
13462 3' -59 NC_003409.1 + 32846 0.71 0.440062
Target:  5'- gGCUGUCCCgguaugCCuCACACAgCAGCAUCu -3'
miRNA:   3'- gUGACGGGG------GGuGUGUGUgGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 33826 0.72 0.396656
Target:  5'- gCGCUGUCCCUgGCGCGC-CC-GUACCc -3'
miRNA:   3'- -GUGACGGGGGgUGUGUGuGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 34116 0.67 0.71485
Target:  5'- aUACUcaaaCCCCCAggaGCGCGCCucgcuGGCGCCu -3'
miRNA:   3'- -GUGAcg--GGGGGUg--UGUGUGG-----UCGUGG- -5'
13462 3' -59 NC_003409.1 + 34596 0.72 0.422371
Target:  5'- gACauCCCCCC-CGCAgGCCAGcCACCg -3'
miRNA:   3'- gUGacGGGGGGuGUGUgUGGUC-GUGG- -5'
13462 3' -59 NC_003409.1 + 35961 0.67 0.674943
Target:  5'- cCAC-GUCCCCCAUugACgcgucuGCCGGCcuaguuGCCg -3'
miRNA:   3'- -GUGaCGGGGGGUGugUG------UGGUCG------UGG- -5'
13462 3' -59 NC_003409.1 + 36027 0.68 0.633468
Target:  5'- uGCUGUCCCCguCAC-CACgCAGCuuaugguACCg -3'
miRNA:   3'- gUGACGGGGGguGUGuGUG-GUCG-------UGG- -5'
13462 3' -59 NC_003409.1 + 41124 0.69 0.56388
Target:  5'- aGCUGgCgCCCAuucuCACGgACCAGCACg -3'
miRNA:   3'- gUGACgGgGGGU----GUGUgUGGUCGUGg -5'
13462 3' -59 NC_003409.1 + 41840 0.73 0.380082
Target:  5'- gACUGCaCCCCUGCGCAaACUuuuuaGGCACCc -3'
miRNA:   3'- gUGACG-GGGGGUGUGUgUGG-----UCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.