miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13462 3' -59 NC_003409.1 + 133212 0.67 0.713864
Target:  5'- gACccgGCCCCgguggugaggcacCUGCAgGCGCUGGCGCCg -3'
miRNA:   3'- gUGa--CGGGG-------------GGUGUgUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 133014 0.66 0.734424
Target:  5'- aACaGCUCCaggccgguCCGCG-GCGCCAGCGCCu -3'
miRNA:   3'- gUGaCGGGG--------GGUGUgUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 132809 0.67 0.695
Target:  5'- gCACagGCgCgCgGCGCGCugCAGUACCu -3'
miRNA:   3'- -GUGa-CGgGgGgUGUGUGugGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 132643 0.68 0.613197
Target:  5'- gGgUGCCCCgagaCGCGgACACCaucggacAGCGCCa -3'
miRNA:   3'- gUgACGGGGg---GUGUgUGUGG-------UCGUGG- -5'
13462 3' -59 NC_003409.1 + 132296 0.7 0.514707
Target:  5'- cCAUUGCCugaCCCCuC-CACGCUGGCACUg -3'
miRNA:   3'- -GUGACGG---GGGGuGuGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 131660 0.66 0.753649
Target:  5'- aGCUGCaguCCCCUGCA-GCcgGCCAGgGCCa -3'
miRNA:   3'- gUGACG---GGGGGUGUgUG--UGGUCgUGG- -5'
13462 3' -59 NC_003409.1 + 131368 0.66 0.744084
Target:  5'- gCAgUGCCCCgUACGCGCucaugGCCGcGUugCa -3'
miRNA:   3'- -GUgACGGGGgGUGUGUG-----UGGU-CGugG- -5'
13462 3' -59 NC_003409.1 + 131237 0.74 0.325823
Target:  5'- gGCUGCCaggCCAgcUACGCCAGCGCCa -3'
miRNA:   3'- gUGACGGgg-GGUguGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 131225 0.67 0.674943
Target:  5'- gCACUGCUCCCagGCA-GCACCAacGCgGCCa -3'
miRNA:   3'- -GUGACGGGGGg-UGUgUGUGGU--CG-UGG- -5'
13462 3' -59 NC_003409.1 + 127946 0.68 0.654748
Target:  5'- aACUccGCCCUCCAC-UACGC-GGCGCCc -3'
miRNA:   3'- gUGA--CGGGGGGUGuGUGUGgUCGUGG- -5'
13462 3' -59 NC_003409.1 + 127943 0.66 0.744084
Target:  5'- uCugUGCUCCCCcguGgACgACGCCgAGUGCCu -3'
miRNA:   3'- -GugACGGGGGG---UgUG-UGUGG-UCGUGG- -5'
13462 3' -59 NC_003409.1 + 127897 0.67 0.704955
Target:  5'- aCugUGCUCCCgguuGCugGCACCGGUucagugguccgACCu -3'
miRNA:   3'- -GugACGGGGGg---UGugUGUGGUCG-----------UGG- -5'
13462 3' -59 NC_003409.1 + 127743 0.71 0.437381
Target:  5'- gCGCUGCCUCCaaaugaUACACACAUUuuuugauugucccgGGCGCCg -3'
miRNA:   3'- -GUGACGGGGG------GUGUGUGUGG--------------UCGUGG- -5'
13462 3' -59 NC_003409.1 + 123587 1.1 0.001023
Target:  5'- aCACUGCCCCCCACACACACCAGCACCc -3'
miRNA:   3'- -GUGACGGGGGGUGUGUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 122755 0.72 0.422371
Target:  5'- uCGgUGCCUUCaCAUAUACaaGCCGGCACCa -3'
miRNA:   3'- -GUgACGGGGG-GUGUGUG--UGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 119691 0.67 0.704955
Target:  5'- -uCUGCCCcgcuCCCAUugGucCGCCGGC-CCg -3'
miRNA:   3'- guGACGGG----GGGUGugU--GUGGUCGuGG- -5'
13462 3' -59 NC_003409.1 + 118794 0.67 0.704955
Target:  5'- gACcGaCCCCCCucgcgcauuacGCGCGCGgCGGCACg -3'
miRNA:   3'- gUGaC-GGGGGG-----------UGUGUGUgGUCGUGg -5'
13462 3' -59 NC_003409.1 + 118637 0.72 0.413688
Target:  5'- gCGCgGUCCCCCGCACcccGCACCccaggaacccGGCGCg -3'
miRNA:   3'- -GUGaCGGGGGGUGUG---UGUGG----------UCGUGg -5'
13462 3' -59 NC_003409.1 + 117725 0.69 0.587942
Target:  5'- gGgUGCCCUgguugacacaaugugCCGCGCAUcaACCAGCGCg -3'
miRNA:   3'- gUgACGGGG---------------GGUGUGUG--UGGUCGUGg -5'
13462 3' -59 NC_003409.1 + 116601 0.67 0.71485
Target:  5'- uCugUGCUUgCUGCugACGCUGGCGCUu -3'
miRNA:   3'- -GugACGGGgGGUGugUGUGGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.