miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13463 5' -59.3 NC_003409.1 + 130951 1.11 0.000726
Target:  5'- gGCCACCAGCAGCUGGAAGCCCACCUCg -3'
miRNA:   3'- -CGGUGGUCGUCGACCUUCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 10023 0.77 0.180789
Target:  5'- uGCUGCCGGCGGCgGGggGUCCACg-- -3'
miRNA:   3'- -CGGUGGUCGUCGaCCuuCGGGUGgag -5'
13463 5' -59.3 NC_003409.1 + 122927 0.75 0.254931
Target:  5'- uGCCAaaaguCCAGguGUUGGGAGCCCcCCa- -3'
miRNA:   3'- -CGGU-----GGUCguCGACCUUCGGGuGGag -5'
13463 5' -59.3 NC_003409.1 + 115092 0.74 0.267361
Target:  5'- gGCUGCCAGUAGUuuuUGG-AGCUCAUCUCg -3'
miRNA:   3'- -CGGUGGUCGUCG---ACCuUCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 127402 0.74 0.280276
Target:  5'- cGCCGCCAGCAaauuuaagucCUGGuGGCUCACCUg -3'
miRNA:   3'- -CGGUGGUCGUc---------GACCuUCGGGUGGAg -5'
13463 5' -59.3 NC_003409.1 + 72864 0.73 0.321979
Target:  5'- aGCCGCauGCAGCgGGGugAGCCUGCCUCc -3'
miRNA:   3'- -CGGUGguCGUCGaCCU--UCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 24212 0.73 0.329365
Target:  5'- gGCgCGCCAGCGGUggGcGggGCCCcauCCUCc -3'
miRNA:   3'- -CG-GUGGUCGUCGa-C-CuuCGGGu--GGAG- -5'
13463 5' -59.3 NC_003409.1 + 10173 0.72 0.360146
Target:  5'- cGCCGCCGGCAGCagcGGuacuGGCUgACCg- -3'
miRNA:   3'- -CGGUGGUCGUCGa--CCu---UCGGgUGGag -5'
13463 5' -59.3 NC_003409.1 + 125636 0.72 0.376272
Target:  5'- aGCC-CCAGCAGC-GGGAGCCaCAgCa- -3'
miRNA:   3'- -CGGuGGUCGUCGaCCUUCGG-GUgGag -5'
13463 5' -59.3 NC_003409.1 + 131533 0.71 0.427483
Target:  5'- uGCCACgCAGCGGUagucccUGGccGCCCgcagcACCUCu -3'
miRNA:   3'- -CGGUG-GUCGUCG------ACCuuCGGG-----UGGAG- -5'
13463 5' -59.3 NC_003409.1 + 90946 0.71 0.435514
Target:  5'- aCCACCAGCauuccuuuaccucGGCacacaGGAGGCgCCACCUUc -3'
miRNA:   3'- cGGUGGUCG-------------UCGa----CCUUCG-GGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 79254 0.71 0.436412
Target:  5'- uGCCGCCAGCGcuCUGGAcAGCCUuCCa- -3'
miRNA:   3'- -CGGUGGUCGUc-GACCU-UCGGGuGGag -5'
13463 5' -59.3 NC_003409.1 + 36036 0.71 0.436412
Target:  5'- cGUCACCAcGCAGCuuaUGGuaccGGUgCACCUCa -3'
miRNA:   3'- -CGGUGGU-CGUCG---ACCu---UCGgGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 66674 0.7 0.454588
Target:  5'- gGCCACCAGU-GUUGGAAGagCCGCUg- -3'
miRNA:   3'- -CGGUGGUCGuCGACCUUCg-GGUGGag -5'
13463 5' -59.3 NC_003409.1 + 132234 0.7 0.463828
Target:  5'- uCUGCCGGgAGCUGGGAGUggcacuguCCAUCUCc -3'
miRNA:   3'- cGGUGGUCgUCGACCUUCG--------GGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 132969 0.7 0.473166
Target:  5'- uCCGCaGGCAGgUGGguGCgCACCUCg -3'
miRNA:   3'- cGGUGgUCGUCgACCuuCGgGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 51771 0.69 0.511413
Target:  5'- cGCCGCCAGagGGCgccguAGCCCACCc- -3'
miRNA:   3'- -CGGUGGUCg-UCGaccu-UCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 108776 0.69 0.521177
Target:  5'- gGCCACCgugucuauGGUGGCcaacaGGAGGCCgGCCUg -3'
miRNA:   3'- -CGGUGG--------UCGUCGa----CCUUCGGgUGGAg -5'
13463 5' -59.3 NC_003409.1 + 128421 0.69 0.531014
Target:  5'- cGUCACCuguuuGGCAaCUGGucGCCCACCc- -3'
miRNA:   3'- -CGGUGG-----UCGUcGACCuuCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 111127 0.68 0.590214
Target:  5'- cGCCcUCAGUccgggggGGCUGGAGcGCCguCCUCu -3'
miRNA:   3'- -CGGuGGUCG-------UCGACCUU-CGGguGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.