miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13463 5' -59.3 NC_003409.1 + 130951 1.11 0.000726
Target:  5'- gGCCACCAGCAGCUGGAAGCCCACCUCg -3'
miRNA:   3'- -CGGUGGUCGUCGACCUUCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 10387 0.67 0.662692
Target:  5'- uUCACCGGcCAGCUGGgcGCgCGCa-- -3'
miRNA:   3'- cGGUGGUC-GUCGACCuuCGgGUGgag -5'
13463 5' -59.3 NC_003409.1 + 61099 0.67 0.672868
Target:  5'- uGCaUACCuuuGCGGUaugGGucGCCUACCUCu -3'
miRNA:   3'- -CG-GUGGu--CGUCGa--CCuuCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 37181 0.66 0.731934
Target:  5'- uCCGCCAcGCAGCucaucaaUGGGAGaaCCaACCUCu -3'
miRNA:   3'- cGGUGGU-CGUCG-------ACCUUCg-GG-UGGAG- -5'
13463 5' -59.3 NC_003409.1 + 72864 0.73 0.321979
Target:  5'- aGCCGCauGCAGCgGGGugAGCCUGCCUCc -3'
miRNA:   3'- -CGGUGguCGUCGaCCU--UCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 131533 0.71 0.427483
Target:  5'- uGCCACgCAGCGGUagucccUGGccGCCCgcagcACCUCu -3'
miRNA:   3'- -CGGUG-GUCGUCG------ACCuuCGGG-----UGGAG- -5'
13463 5' -59.3 NC_003409.1 + 36036 0.71 0.436412
Target:  5'- cGUCACCAcGCAGCuuaUGGuaccGGUgCACCUCa -3'
miRNA:   3'- -CGGUGGU-CGUCG---ACCu---UCGgGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 79254 0.71 0.436412
Target:  5'- uGCCGCCAGCGcuCUGGAcAGCCUuCCa- -3'
miRNA:   3'- -CGGUGGUCGUc-GACCU-UCGGGuGGag -5'
13463 5' -59.3 NC_003409.1 + 128421 0.69 0.531014
Target:  5'- cGUCACCuguuuGGCAaCUGGucGCCCACCc- -3'
miRNA:   3'- -CGGUGG-----UCGUcGACCuuCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 108735 0.68 0.61161
Target:  5'- cGCC-CCAGCuAGCUGGccugcaggaaAAGCUgGCCg- -3'
miRNA:   3'- -CGGuGGUCG-UCGACC----------UUCGGgUGGag -5'
13463 5' -59.3 NC_003409.1 + 95559 0.68 0.601409
Target:  5'- cGCCGCUggggGGCAGCUGGugacagAGGCagCGuCCUCa -3'
miRNA:   3'- -CGGUGG----UCGUCGACC------UUCGg-GU-GGAG- -5'
13463 5' -59.3 NC_003409.1 + 51771 0.69 0.511413
Target:  5'- cGCCGCCAGagGGCgccguAGCCCACCc- -3'
miRNA:   3'- -CGGUGGUCg-UCGaccu-UCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 10023 0.77 0.180789
Target:  5'- uGCUGCCGGCGGCgGGggGUCCACg-- -3'
miRNA:   3'- -CGGUGGUCGUCGaCCuuCGGGUGgag -5'
13463 5' -59.3 NC_003409.1 + 79992 0.68 0.61161
Target:  5'- aGCCACgAGgAGCUGGGgcAGCUauacggCACUUCc -3'
miRNA:   3'- -CGGUGgUCgUCGACCU--UCGG------GUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 122927 0.75 0.254931
Target:  5'- uGCCAaaaguCCAGguGUUGGGAGCCCcCCa- -3'
miRNA:   3'- -CGGU-----GGUCguCGACCUUCGGGuGGag -5'
13463 5' -59.3 NC_003409.1 + 132969 0.7 0.473166
Target:  5'- uCCGCaGGCAGgUGGguGCgCACCUCg -3'
miRNA:   3'- cGGUGgUCGUCgACCuuCGgGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 71417 0.68 0.61161
Target:  5'- cGCCcagaaACCAGUAGCUGGGuGGCaaugaCACgUCc -3'
miRNA:   3'- -CGG-----UGGUCGUCGACCU-UCGg----GUGgAG- -5'
13463 5' -59.3 NC_003409.1 + 35281 0.67 0.662692
Target:  5'- uGCUcuuuuGCguGCuGCUGGAAGCCUGCUc- -3'
miRNA:   3'- -CGG-----UGguCGuCGACCUUCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 127402 0.74 0.280276
Target:  5'- cGCCGCCAGCAaauuuaagucCUGGuGGCUCACCUg -3'
miRNA:   3'- -CGGUGGUCGUc---------GACCuUCGGGUGGAg -5'
13463 5' -59.3 NC_003409.1 + 90946 0.71 0.435514
Target:  5'- aCCACCAGCauuccuuuaccucGGCacacaGGAGGCgCCACCUUc -3'
miRNA:   3'- cGGUGGUCG-------------UCGa----CCUUCG-GGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.