Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13463 | 5' | -59.3 | NC_003409.1 | + | 132234 | 0.7 | 0.463828 |
Target: 5'- uCUGCCGGgAGCUGGGAGUggcacuguCCAUCUCc -3' miRNA: 3'- cGGUGGUCgUCGACCUUCG--------GGUGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 82694 | 0.67 | 0.632051 |
Target: 5'- aCCugCGGaCGGCgGGucGCUCGCUUCg -3' miRNA: 3'- cGGugGUC-GUCGaCCuuCGGGUGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 33016 | 0.68 | 0.601409 |
Target: 5'- cGCCGCaaggAGCAGCcugcagGGGAGCaCACUUCc -3' miRNA: 3'- -CGGUGg---UCGUCGa-----CCUUCGgGUGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 113520 | 0.68 | 0.601409 |
Target: 5'- uGCgGCgCAGCAGCUGcuuGgcGCCCACgUa -3' miRNA: 3'- -CGgUG-GUCGUCGAC---CuuCGGGUGgAg -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 125576 | 0.68 | 0.59123 |
Target: 5'- aGCCA-CAGCAGC-GGGAGCCaCAgCa- -3' miRNA: 3'- -CGGUgGUCGUCGaCCUUCGG-GUgGag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 125606 | 0.68 | 0.59123 |
Target: 5'- aGCCA-CAGCAGC-GGGAGCCaCAgCa- -3' miRNA: 3'- -CGGUgGUCGUCGaCCUUCGG-GUgGag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 125666 | 0.68 | 0.59123 |
Target: 5'- aGCCA-CAGCAGC-GGGAGCCaCAgCa- -3' miRNA: 3'- -CGGUgGUCGUCGaCCUUCGG-GUgGag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 111127 | 0.68 | 0.590214 |
Target: 5'- cGCCcUCAGUccgggggGGCUGGAGcGCCguCCUCu -3' miRNA: 3'- -CGGuGGUCG-------UCGACCUU-CGGguGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 108776 | 0.69 | 0.521177 |
Target: 5'- gGCCACCgugucuauGGUGGCcaacaGGAGGCCgGCCUg -3' miRNA: 3'- -CGGUGG--------UCGUCGa----CCUUCGGgUGGAg -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 125942 | 0.67 | 0.642275 |
Target: 5'- aGCCA-CAGCAGCaGGAGcCCCugCa- -3' miRNA: 3'- -CGGUgGUCGUCGaCCUUcGGGugGag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 125885 | 0.67 | 0.642275 |
Target: 5'- aGCCA-CAGCAGCaGGAGcCCCugCa- -3' miRNA: 3'- -CGGUgGUCGUCGaCCUUcGGGugGag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 125843 | 0.67 | 0.642275 |
Target: 5'- aGCCA-CAGCAGCaGGAGcCCCugCa- -3' miRNA: 3'- -CGGUgGUCGUCGaCCUUcGGGugGag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 68506 | 0.66 | 0.732915 |
Target: 5'- gGCCGCgCGGCuauGCUGGA--CCCACg-- -3' miRNA: 3'- -CGGUG-GUCGu--CGACCUucGGGUGgag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 88341 | 0.66 | 0.713151 |
Target: 5'- cGCCAUCGG-GGCUGaGggGUCgC-CCUCg -3' miRNA: 3'- -CGGUGGUCgUCGAC-CuuCGG-GuGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 117698 | 0.66 | 0.693111 |
Target: 5'- cGCaucaACCAGC-GCgacGGAAGUUgGCCUCc -3' miRNA: 3'- -CGg---UGGUCGuCGa--CCUUCGGgUGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 35443 | 0.66 | 0.678958 |
Target: 5'- gGCUuCCAGCAGCacgcaaaagagcaGGuaaccGGGCCCACCUg -3' miRNA: 3'- -CGGuGGUCGUCGa------------CC-----UUCGGGUGGAg -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 88834 | 0.67 | 0.672868 |
Target: 5'- uGCCuGCCGGCAGCgauau-CCCGCCUg -3' miRNA: 3'- -CGG-UGGUCGUCGaccuucGGGUGGAg -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 26505 | 0.67 | 0.652492 |
Target: 5'- cGCCuguACCGGagAGCUGGAugucGUCCACC-Cg -3' miRNA: 3'- -CGG---UGGUCg-UCGACCUu---CGGGUGGaG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 131108 | 0.67 | 0.642275 |
Target: 5'- gGCUuCCAGCuGCUGGuGGCCCuggguguaguggGCCg- -3' miRNA: 3'- -CGGuGGUCGuCGACCuUCGGG------------UGGag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 32316 | 0.67 | 0.642275 |
Target: 5'- cGUCGCCAGCcuuccuagAGCUGGcauccAGGCUggcggaCACCUCc -3' miRNA: 3'- -CGGUGGUCG--------UCGACC-----UUCGG------GUGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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