miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13463 5' -59.3 NC_003409.1 + 10023 0.77 0.180789
Target:  5'- uGCUGCCGGCGGCgGGggGUCCACg-- -3'
miRNA:   3'- -CGGUGGUCGUCGaCCuuCGGGUGgag -5'
13463 5' -59.3 NC_003409.1 + 10173 0.72 0.360146
Target:  5'- cGCCGCCGGCAGCagcGGuacuGGCUgACCg- -3'
miRNA:   3'- -CGGUGGUCGUCGa--CCu---UCGGgUGGag -5'
13463 5' -59.3 NC_003409.1 + 10387 0.67 0.662692
Target:  5'- uUCACCGGcCAGCUGGgcGCgCGCa-- -3'
miRNA:   3'- cGGUGGUC-GUCGACCuuCGgGUGgag -5'
13463 5' -59.3 NC_003409.1 + 24212 0.73 0.329365
Target:  5'- gGCgCGCCAGCGGUggGcGggGCCCcauCCUCc -3'
miRNA:   3'- -CG-GUGGUCGUCGa-C-CuuCGGGu--GGAG- -5'
13463 5' -59.3 NC_003409.1 + 26505 0.67 0.652492
Target:  5'- cGCCuguACCGGagAGCUGGAugucGUCCACC-Cg -3'
miRNA:   3'- -CGG---UGGUCg-UCGACCUu---CGGGUGGaG- -5'
13463 5' -59.3 NC_003409.1 + 32316 0.67 0.642275
Target:  5'- cGUCGCCAGCcuuccuagAGCUGGcauccAGGCUggcggaCACCUCc -3'
miRNA:   3'- -CGGUGGUCG--------UCGACC-----UUCGG------GUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 33016 0.68 0.601409
Target:  5'- cGCCGCaaggAGCAGCcugcagGGGAGCaCACUUCc -3'
miRNA:   3'- -CGGUGg---UCGUCGa-----CCUUCGgGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 35281 0.67 0.662692
Target:  5'- uGCUcuuuuGCguGCuGCUGGAAGCCUGCUc- -3'
miRNA:   3'- -CGG-----UGguCGuCGACCUUCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 35443 0.66 0.678958
Target:  5'- gGCUuCCAGCAGCacgcaaaagagcaGGuaaccGGGCCCACCUg -3'
miRNA:   3'- -CGGuGGUCGUCGa------------CC-----UUCGGGUGGAg -5'
13463 5' -59.3 NC_003409.1 + 36036 0.71 0.436412
Target:  5'- cGUCACCAcGCAGCuuaUGGuaccGGUgCACCUCa -3'
miRNA:   3'- -CGGUGGU-CGUCG---ACCu---UCGgGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 37181 0.66 0.731934
Target:  5'- uCCGCCAcGCAGCucaucaaUGGGAGaaCCaACCUCu -3'
miRNA:   3'- cGGUGGU-CGUCG-------ACCUUCg-GG-UGGAG- -5'
13463 5' -59.3 NC_003409.1 + 46609 0.66 0.732915
Target:  5'- cGUCGCCgagggAGCcacGCUGcGAAGCCCACg-- -3'
miRNA:   3'- -CGGUGG-----UCGu--CGAC-CUUCGGGUGgag -5'
13463 5' -59.3 NC_003409.1 + 51771 0.69 0.511413
Target:  5'- cGCCGCCAGagGGCgccguAGCCCACCc- -3'
miRNA:   3'- -CGGUGGUCg-UCGaccu-UCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 53723 0.66 0.68301
Target:  5'- cGCaCAUCAGCgAGCUGGA--CCguCCUCc -3'
miRNA:   3'- -CG-GUGGUCG-UCGACCUucGGguGGAG- -5'
13463 5' -59.3 NC_003409.1 + 61099 0.67 0.672868
Target:  5'- uGCaUACCuuuGCGGUaugGGucGCCUACCUCu -3'
miRNA:   3'- -CG-GUGGu--CGUCGa--CCuuCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 66674 0.7 0.454588
Target:  5'- gGCCACCAGU-GUUGGAAGagCCGCUg- -3'
miRNA:   3'- -CGGUGGUCGuCGACCUUCg-GGUGGag -5'
13463 5' -59.3 NC_003409.1 + 68506 0.66 0.732915
Target:  5'- gGCCGCgCGGCuauGCUGGA--CCCACg-- -3'
miRNA:   3'- -CGGUG-GUCGu--CGACCUucGGGUGgag -5'
13463 5' -59.3 NC_003409.1 + 70579 0.66 0.68301
Target:  5'- cCCAUgGGCGGgUGGGugacAGUCCGCCa- -3'
miRNA:   3'- cGGUGgUCGUCgACCU----UCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 71417 0.68 0.61161
Target:  5'- cGCCcagaaACCAGUAGCUGGGuGGCaaugaCACgUCc -3'
miRNA:   3'- -CGG-----UGGUCGUCGACCU-UCGg----GUGgAG- -5'
13463 5' -59.3 NC_003409.1 + 72864 0.73 0.321979
Target:  5'- aGCCGCauGCAGCgGGGugAGCCUGCCUCc -3'
miRNA:   3'- -CGGUGguCGUCGaCCU--UCGGGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.