miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13463 5' -59.3 NC_003409.1 + 133703 0.66 0.703161
Target:  5'- cGCCAgCGGUAGCaGGucuGCCC-CCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCuu-CGGGuGGag -5'
13463 5' -59.3 NC_003409.1 + 132969 0.7 0.473166
Target:  5'- uCCGCaGGCAGgUGGguGCgCACCUCg -3'
miRNA:   3'- cGGUGgUCGUCgACCuuCGgGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 132234 0.7 0.463828
Target:  5'- uCUGCCGGgAGCUGGGAGUggcacuguCCAUCUCc -3'
miRNA:   3'- cGGUGGUCgUCGACCUUCG--------GGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 131533 0.71 0.427483
Target:  5'- uGCCACgCAGCGGUagucccUGGccGCCCgcagcACCUCu -3'
miRNA:   3'- -CGGUG-GUCGUCG------ACCuuCGGG-----UGGAG- -5'
13463 5' -59.3 NC_003409.1 + 131108 0.67 0.642275
Target:  5'- gGCUuCCAGCuGCUGGuGGCCCuggguguaguggGCCg- -3'
miRNA:   3'- -CGGuGGUCGuCGACCuUCGGG------------UGGag -5'
13463 5' -59.3 NC_003409.1 + 130951 1.11 0.000726
Target:  5'- gGCCACCAGCAGCUGGAAGCCCACCUCg -3'
miRNA:   3'- -CGGUGGUCGUCGACCUUCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 128421 0.69 0.531014
Target:  5'- cGUCACCuguuuGGCAaCUGGucGCCCACCc- -3'
miRNA:   3'- -CGGUGG-----UCGUcGACCuuCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 127402 0.74 0.280276
Target:  5'- cGCCGCCAGCAaauuuaagucCUGGuGGCUCACCUg -3'
miRNA:   3'- -CGGUGGUCGUc---------GACCuUCGGGUGGAg -5'
13463 5' -59.3 NC_003409.1 + 125942 0.67 0.642275
Target:  5'- aGCCA-CAGCAGCaGGAGcCCCugCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUcGGGugGag -5'
13463 5' -59.3 NC_003409.1 + 125885 0.67 0.642275
Target:  5'- aGCCA-CAGCAGCaGGAGcCCCugCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUcGGGugGag -5'
13463 5' -59.3 NC_003409.1 + 125843 0.67 0.642275
Target:  5'- aGCCA-CAGCAGCaGGAGcCCCugCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUcGGGugGag -5'
13463 5' -59.3 NC_003409.1 + 125666 0.68 0.59123
Target:  5'- aGCCA-CAGCAGC-GGGAGCCaCAgCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUCGG-GUgGag -5'
13463 5' -59.3 NC_003409.1 + 125636 0.72 0.376272
Target:  5'- aGCC-CCAGCAGC-GGGAGCCaCAgCa- -3'
miRNA:   3'- -CGGuGGUCGUCGaCCUUCGG-GUgGag -5'
13463 5' -59.3 NC_003409.1 + 125606 0.68 0.59123
Target:  5'- aGCCA-CAGCAGC-GGGAGCCaCAgCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUCGG-GUgGag -5'
13463 5' -59.3 NC_003409.1 + 125576 0.68 0.59123
Target:  5'- aGCCA-CAGCAGC-GGGAGCCaCAgCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUCGG-GUgGag -5'
13463 5' -59.3 NC_003409.1 + 122927 0.75 0.254931
Target:  5'- uGCCAaaaguCCAGguGUUGGGAGCCCcCCa- -3'
miRNA:   3'- -CGGU-----GGUCguCGACCUUCGGGuGGag -5'
13463 5' -59.3 NC_003409.1 + 117698 0.66 0.693111
Target:  5'- cGCaucaACCAGC-GCgacGGAAGUUgGCCUCc -3'
miRNA:   3'- -CGg---UGGUCGuCGa--CCUUCGGgUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 117502 0.66 0.717128
Target:  5'- cGCCAUuuGCGugcaaaaugugcuuuGCUGGAGGCCaACUUCc -3'
miRNA:   3'- -CGGUGguCGU---------------CGACCUUCGGgUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 115092 0.74 0.267361
Target:  5'- gGCUGCCAGUAGUuuuUGG-AGCUCAUCUCg -3'
miRNA:   3'- -CGGUGGUCGUCG---ACCuUCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 113520 0.68 0.601409
Target:  5'- uGCgGCgCAGCAGCUGcuuGgcGCCCACgUa -3'
miRNA:   3'- -CGgUG-GUCGUCGAC---CuuCGGGUGgAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.