miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13463 5' -59.3 NC_003409.1 + 79254 0.71 0.436412
Target:  5'- uGCCGCCAGCGcuCUGGAcAGCCUuCCa- -3'
miRNA:   3'- -CGGUGGUCGUc-GACCU-UCGGGuGGag -5'
13463 5' -59.3 NC_003409.1 + 79992 0.68 0.61161
Target:  5'- aGCCACgAGgAGCUGGGgcAGCUauacggCACUUCc -3'
miRNA:   3'- -CGGUGgUCgUCGACCU--UCGG------GUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 82694 0.67 0.632051
Target:  5'- aCCugCGGaCGGCgGGucGCUCGCUUCg -3'
miRNA:   3'- cGGugGUC-GUCGaCCuuCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 86601 0.68 0.601409
Target:  5'- cGCCGCCcguGCGGggacCUGGAccucgGGCgCCGCCUa -3'
miRNA:   3'- -CGGUGGu--CGUC----GACCU-----UCG-GGUGGAg -5'
13463 5' -59.3 NC_003409.1 + 87434 0.66 0.723072
Target:  5'- cGCuCACUcGCAGCacccUGaGGAGCCCgGCCUUc -3'
miRNA:   3'- -CG-GUGGuCGUCG----AC-CUUCGGG-UGGAG- -5'
13463 5' -59.3 NC_003409.1 + 88341 0.66 0.713151
Target:  5'- cGCCAUCGG-GGCUGaGggGUCgC-CCUCg -3'
miRNA:   3'- -CGGUGGUCgUCGAC-CuuCGG-GuGGAG- -5'
13463 5' -59.3 NC_003409.1 + 88834 0.67 0.672868
Target:  5'- uGCCuGCCGGCAGCgauau-CCCGCCUg -3'
miRNA:   3'- -CGG-UGGUCGUCGaccuucGGGUGGAg -5'
13463 5' -59.3 NC_003409.1 + 90946 0.71 0.435514
Target:  5'- aCCACCAGCauuccuuuaccucGGCacacaGGAGGCgCCACCUUc -3'
miRNA:   3'- cGGUGGUCG-------------UCGa----CCUUCG-GGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 95559 0.68 0.601409
Target:  5'- cGCCGCUggggGGCAGCUGGugacagAGGCagCGuCCUCa -3'
miRNA:   3'- -CGGUGG----UCGUCGACC------UUCGg-GU-GGAG- -5'
13463 5' -59.3 NC_003409.1 + 108735 0.68 0.61161
Target:  5'- cGCC-CCAGCuAGCUGGccugcaggaaAAGCUgGCCg- -3'
miRNA:   3'- -CGGuGGUCG-UCGACC----------UUCGGgUGGag -5'
13463 5' -59.3 NC_003409.1 + 108776 0.69 0.521177
Target:  5'- gGCCACCgugucuauGGUGGCcaacaGGAGGCCgGCCUg -3'
miRNA:   3'- -CGGUGG--------UCGUCGa----CCUUCGGgUGGAg -5'
13463 5' -59.3 NC_003409.1 + 109720 0.66 0.703161
Target:  5'- uGCCuagauCCugagguaauaaGGCAGCUGu-GGUCCACCUUg -3'
miRNA:   3'- -CGGu----GG-----------UCGUCGACcuUCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 110900 0.66 0.723072
Target:  5'- cCCGCC-GCGGUcauugacccacGGAAGCCCGUCUCg -3'
miRNA:   3'- cGGUGGuCGUCGa----------CCUUCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 111127 0.68 0.590214
Target:  5'- cGCCcUCAGUccgggggGGCUGGAGcGCCguCCUCu -3'
miRNA:   3'- -CGGuGGUCG-------UCGACCUU-CGGguGGAG- -5'
13463 5' -59.3 NC_003409.1 + 113520 0.68 0.601409
Target:  5'- uGCgGCgCAGCAGCUGcuuGgcGCCCACgUa -3'
miRNA:   3'- -CGgUG-GUCGUCGAC---CuuCGGGUGgAg -5'
13463 5' -59.3 NC_003409.1 + 115092 0.74 0.267361
Target:  5'- gGCUGCCAGUAGUuuuUGG-AGCUCAUCUCg -3'
miRNA:   3'- -CGGUGGUCGUCG---ACCuUCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 117502 0.66 0.717128
Target:  5'- cGCCAUuuGCGugcaaaaugugcuuuGCUGGAGGCCaACUUCc -3'
miRNA:   3'- -CGGUGguCGU---------------CGACCUUCGGgUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 117698 0.66 0.693111
Target:  5'- cGCaucaACCAGC-GCgacGGAAGUUgGCCUCc -3'
miRNA:   3'- -CGg---UGGUCGuCGa--CCUUCGGgUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 122927 0.75 0.254931
Target:  5'- uGCCAaaaguCCAGguGUUGGGAGCCCcCCa- -3'
miRNA:   3'- -CGGU-----GGUCguCGACCUUCGGGuGGag -5'
13463 5' -59.3 NC_003409.1 + 125576 0.68 0.59123
Target:  5'- aGCCA-CAGCAGC-GGGAGCCaCAgCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUCGG-GUgGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.