miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13463 5' -59.3 NC_003409.1 + 10387 0.67 0.662692
Target:  5'- uUCACCGGcCAGCUGGgcGCgCGCa-- -3'
miRNA:   3'- cGGUGGUC-GUCGACCuuCGgGUGgag -5'
13463 5' -59.3 NC_003409.1 + 117502 0.66 0.717128
Target:  5'- cGCCAUuuGCGugcaaaaugugcuuuGCUGGAGGCCaACUUCc -3'
miRNA:   3'- -CGGUGguCGU---------------CGACCUUCGGgUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 132969 0.7 0.473166
Target:  5'- uCCGCaGGCAGgUGGguGCgCACCUCg -3'
miRNA:   3'- cGGUGgUCGUCgACCuuCGgGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 35281 0.67 0.662692
Target:  5'- uGCUcuuuuGCguGCuGCUGGAAGCCUGCUc- -3'
miRNA:   3'- -CGG-----UGguCGuCGACCUUCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 70579 0.66 0.68301
Target:  5'- cCCAUgGGCGGgUGGGugacAGUCCGCCa- -3'
miRNA:   3'- cGGUGgUCGUCgACCU----UCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 87434 0.66 0.723072
Target:  5'- cGCuCACUcGCAGCacccUGaGGAGCCCgGCCUUc -3'
miRNA:   3'- -CG-GUGGuCGUCG----AC-CUUCGGG-UGGAG- -5'
13463 5' -59.3 NC_003409.1 + 71417 0.68 0.61161
Target:  5'- cGCCcagaaACCAGUAGCUGGGuGGCaaugaCACgUCc -3'
miRNA:   3'- -CGG-----UGGUCGUCGACCU-UCGg----GUGgAG- -5'
13463 5' -59.3 NC_003409.1 + 61099 0.67 0.672868
Target:  5'- uGCaUACCuuuGCGGUaugGGucGCCUACCUCu -3'
miRNA:   3'- -CG-GUGGu--CGUCGa--CCuuCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 82694 0.67 0.632051
Target:  5'- aCCugCGGaCGGCgGGucGCUCGCUUCg -3'
miRNA:   3'- cGGugGUC-GUCGaCCuuCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 88341 0.66 0.713151
Target:  5'- cGCCAUCGG-GGCUGaGggGUCgC-CCUCg -3'
miRNA:   3'- -CGGUGGUCgUCGAC-CuuCGG-GuGGAG- -5'
13463 5' -59.3 NC_003409.1 + 113520 0.68 0.601409
Target:  5'- uGCgGCgCAGCAGCUGcuuGgcGCCCACgUa -3'
miRNA:   3'- -CGgUG-GUCGUCGAC---CuuCGGGUGgAg -5'
13463 5' -59.3 NC_003409.1 + 66674 0.7 0.454588
Target:  5'- gGCCACCAGU-GUUGGAAGagCCGCUg- -3'
miRNA:   3'- -CGGUGGUCGuCGACCUUCg-GGUGGag -5'
13463 5' -59.3 NC_003409.1 + 88834 0.67 0.672868
Target:  5'- uGCCuGCCGGCAGCgauau-CCCGCCUg -3'
miRNA:   3'- -CGG-UGGUCGUCGaccuucGGGUGGAg -5'
13463 5' -59.3 NC_003409.1 + 125636 0.72 0.376272
Target:  5'- aGCC-CCAGCAGC-GGGAGCCaCAgCa- -3'
miRNA:   3'- -CGGuGGUCGUCGaCCUUCGG-GUgGag -5'
13463 5' -59.3 NC_003409.1 + 26505 0.67 0.652492
Target:  5'- cGCCuguACCGGagAGCUGGAugucGUCCACC-Cg -3'
miRNA:   3'- -CGG---UGGUCg-UCGACCUu---CGGGUGGaG- -5'
13463 5' -59.3 NC_003409.1 + 10173 0.72 0.360146
Target:  5'- cGCCGCCGGCAGCagcGGuacuGGCUgACCg- -3'
miRNA:   3'- -CGGUGGUCGUCGa--CCu---UCGGgUGGag -5'
13463 5' -59.3 NC_003409.1 + 24212 0.73 0.329365
Target:  5'- gGCgCGCCAGCGGUggGcGggGCCCcauCCUCc -3'
miRNA:   3'- -CG-GUGGUCGUCGa-C-CuuCGGGu--GGAG- -5'
13463 5' -59.3 NC_003409.1 + 115092 0.74 0.267361
Target:  5'- gGCUGCCAGUAGUuuuUGG-AGCUCAUCUCg -3'
miRNA:   3'- -CGGUGGUCGUCG---ACCuUCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 33016 0.68 0.601409
Target:  5'- cGCCGCaaggAGCAGCcugcagGGGAGCaCACUUCc -3'
miRNA:   3'- -CGGUGg---UCGUCGa-----CCUUCGgGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 125942 0.67 0.642275
Target:  5'- aGCCA-CAGCAGCaGGAGcCCCugCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUcGGGugGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.