miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13463 5' -59.3 NC_003409.1 + 32316 0.67 0.642275
Target:  5'- cGUCGCCAGCcuuccuagAGCUGGcauccAGGCUggcggaCACCUCc -3'
miRNA:   3'- -CGGUGGUCG--------UCGACC-----UUCGG------GUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 125843 0.67 0.642275
Target:  5'- aGCCA-CAGCAGCaGGAGcCCCugCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUcGGGugGag -5'
13463 5' -59.3 NC_003409.1 + 125942 0.67 0.642275
Target:  5'- aGCCA-CAGCAGCaGGAGcCCCugCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUcGGGugGag -5'
13463 5' -59.3 NC_003409.1 + 82694 0.67 0.632051
Target:  5'- aCCugCGGaCGGCgGGucGCUCGCUUCg -3'
miRNA:   3'- cGGugGUC-GUCGaCCuuCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 108735 0.68 0.61161
Target:  5'- cGCC-CCAGCuAGCUGGccugcaggaaAAGCUgGCCg- -3'
miRNA:   3'- -CGGuGGUCG-UCGACC----------UUCGGgUGGag -5'
13463 5' -59.3 NC_003409.1 + 71417 0.68 0.61161
Target:  5'- cGCCcagaaACCAGUAGCUGGGuGGCaaugaCACgUCc -3'
miRNA:   3'- -CGG-----UGGUCGUCGACCU-UCGg----GUGgAG- -5'
13463 5' -59.3 NC_003409.1 + 79992 0.68 0.61161
Target:  5'- aGCCACgAGgAGCUGGGgcAGCUauacggCACUUCc -3'
miRNA:   3'- -CGGUGgUCgUCGACCU--UCGG------GUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 113520 0.68 0.601409
Target:  5'- uGCgGCgCAGCAGCUGcuuGgcGCCCACgUa -3'
miRNA:   3'- -CGgUG-GUCGUCGAC---CuuCGGGUGgAg -5'
13463 5' -59.3 NC_003409.1 + 95559 0.68 0.601409
Target:  5'- cGCCGCUggggGGCAGCUGGugacagAGGCagCGuCCUCa -3'
miRNA:   3'- -CGGUGG----UCGUCGACC------UUCGg-GU-GGAG- -5'
13463 5' -59.3 NC_003409.1 + 33016 0.68 0.601409
Target:  5'- cGCCGCaaggAGCAGCcugcagGGGAGCaCACUUCc -3'
miRNA:   3'- -CGGUGg---UCGUCGa-----CCUUCGgGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 86601 0.68 0.601409
Target:  5'- cGCCGCCcguGCGGggacCUGGAccucgGGCgCCGCCUa -3'
miRNA:   3'- -CGGUGGu--CGUC----GACCU-----UCG-GGUGGAg -5'
13463 5' -59.3 NC_003409.1 + 125576 0.68 0.59123
Target:  5'- aGCCA-CAGCAGC-GGGAGCCaCAgCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUCGG-GUgGag -5'
13463 5' -59.3 NC_003409.1 + 125606 0.68 0.59123
Target:  5'- aGCCA-CAGCAGC-GGGAGCCaCAgCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUCGG-GUgGag -5'
13463 5' -59.3 NC_003409.1 + 125666 0.68 0.59123
Target:  5'- aGCCA-CAGCAGC-GGGAGCCaCAgCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUCGG-GUgGag -5'
13463 5' -59.3 NC_003409.1 + 111127 0.68 0.590214
Target:  5'- cGCCcUCAGUccgggggGGCUGGAGcGCCguCCUCu -3'
miRNA:   3'- -CGGuGGUCG-------UCGACCUU-CGGguGGAG- -5'
13463 5' -59.3 NC_003409.1 + 128421 0.69 0.531014
Target:  5'- cGUCACCuguuuGGCAaCUGGucGCCCACCc- -3'
miRNA:   3'- -CGGUGG-----UCGUcGACCuuCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 108776 0.69 0.521177
Target:  5'- gGCCACCgugucuauGGUGGCcaacaGGAGGCCgGCCUg -3'
miRNA:   3'- -CGGUGG--------UCGUCGa----CCUUCGGgUGGAg -5'
13463 5' -59.3 NC_003409.1 + 51771 0.69 0.511413
Target:  5'- cGCCGCCAGagGGCgccguAGCCCACCc- -3'
miRNA:   3'- -CGGUGGUCg-UCGaccu-UCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 132969 0.7 0.473166
Target:  5'- uCCGCaGGCAGgUGGguGCgCACCUCg -3'
miRNA:   3'- cGGUGgUCGUCgACCuuCGgGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 132234 0.7 0.463828
Target:  5'- uCUGCCGGgAGCUGGGAGUggcacuguCCAUCUCc -3'
miRNA:   3'- cGGUGGUCgUCGACCUUCG--------GGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.