miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13468 3' -53 NC_003409.1 + 53088 0.66 0.967008
Target:  5'- ---uGAUCAuUUCUCCGuuaauucCCACAGCCa -3'
miRNA:   3'- cacuCUAGU-GAGAGGUu------GGUGUCGGg -5'
13468 3' -53 NC_003409.1 + 85098 0.66 0.967008
Target:  5'- -aGGGuUCGgUCUuuGGCCugGGUCCa -3'
miRNA:   3'- caCUCuAGUgAGAggUUGGugUCGGG- -5'
13468 3' -53 NC_003409.1 + 113107 0.66 0.961552
Target:  5'- -cGAGggCAC-CUCCAggaggggacgacgcgGCaACGGCCCa -3'
miRNA:   3'- caCUCuaGUGaGAGGU---------------UGgUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 54979 0.66 0.956291
Target:  5'- -gGAGAUUACUaaagUCUGGCCGCAagGCCg -3'
miRNA:   3'- caCUCUAGUGAg---AGGUUGGUGU--CGGg -5'
13468 3' -53 NC_003409.1 + 35997 0.66 0.955102
Target:  5'- uUGGGGUC-CUCUUgAgucccugcagauccGCC-CAGCCCa -3'
miRNA:   3'- cACUCUAGuGAGAGgU--------------UGGuGUCGGG- -5'
13468 3' -53 NC_003409.1 + 71333 0.67 0.947956
Target:  5'- -aGAGGUCugUUUCCGGagCGCGGacaCCCg -3'
miRNA:   3'- caCUCUAGugAGAGGUUg-GUGUC---GGG- -5'
13468 3' -53 NC_003409.1 + 72237 0.67 0.947956
Target:  5'- -aGAGuuuUgACUCUCCAAuacccCCACAcggcGCCCc -3'
miRNA:   3'- caCUCu--AgUGAGAGGUU-----GGUGU----CGGG- -5'
13468 3' -53 NC_003409.1 + 57914 0.67 0.947956
Target:  5'- -----uUCACcacCUCCucgcACCGCAGCCCa -3'
miRNA:   3'- cacucuAGUGa--GAGGu---UGGUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 69355 0.67 0.947514
Target:  5'- uUGAccugcgugCGCUCUCCGGCUGCugcuuuuAGCCCg -3'
miRNA:   3'- cACUcua-----GUGAGAGGUUGGUG-------UCGGG- -5'
13468 3' -53 NC_003409.1 + 100712 0.67 0.945264
Target:  5'- cGUGAccaaGGUCAC-CUCCG-CCAUgaagggaguuggguuGGCCCg -3'
miRNA:   3'- -CACU----CUAGUGaGAGGUuGGUG---------------UCGGG- -5'
13468 3' -53 NC_003409.1 + 131654 0.67 0.943419
Target:  5'- aGUGAGAgcugCAgUCcccugcagCCGGCCAgGGCCa -3'
miRNA:   3'- -CACUCUa---GUgAGa-------GGUUGGUgUCGGg -5'
13468 3' -53 NC_003409.1 + 51463 0.67 0.938633
Target:  5'- -cGAGAUCAUcuUUUCCAcCUACA-CCCg -3'
miRNA:   3'- caCUCUAGUG--AGAGGUuGGUGUcGGG- -5'
13468 3' -53 NC_003409.1 + 87031 0.67 0.933593
Target:  5'- aGUGAGGUCAauaaUCUCCAcuuCgAgGGCaCCa -3'
miRNA:   3'- -CACUCUAGUg---AGAGGUu--GgUgUCG-GG- -5'
13468 3' -53 NC_003409.1 + 81392 0.67 0.933593
Target:  5'- ----cAUCACUCcCCgGGCCACAGCgCCg -3'
miRNA:   3'- cacucUAGUGAGaGG-UUGGUGUCG-GG- -5'
13468 3' -53 NC_003409.1 + 71495 0.67 0.933593
Target:  5'- uGUGAGAaUACUgUCCAG--GCAGCCa -3'
miRNA:   3'- -CACUCUaGUGAgAGGUUggUGUCGGg -5'
13468 3' -53 NC_003409.1 + 42011 0.67 0.933593
Target:  5'- -cGAGAccaGCUCUCCGuGCCACc-CCCa -3'
miRNA:   3'- caCUCUag-UGAGAGGU-UGGUGucGGG- -5'
13468 3' -53 NC_003409.1 + 107881 0.67 0.928301
Target:  5'- -cGGccagCGCUCgcaCCAGCgGCAGCCCu -3'
miRNA:   3'- caCUcua-GUGAGa--GGUUGgUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 67236 0.68 0.925003
Target:  5'- -gGGGAUUACUgUCCAuuACCAgguaacgagcgucgaUGGCCCu -3'
miRNA:   3'- caCUCUAGUGAgAGGU--UGGU---------------GUCGGG- -5'
13468 3' -53 NC_003409.1 + 55189 0.68 0.922754
Target:  5'- -cGGGGUCACacaggCCAuCUACAGCCUc -3'
miRNA:   3'- caCUCUAGUGaga--GGUuGGUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 34294 0.68 0.922753
Target:  5'- cGUGAG---GCUgaUgAACCACGGCCCa -3'
miRNA:   3'- -CACUCuagUGAgaGgUUGGUGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.