Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13468 | 3' | -53 | NC_003409.1 | + | 34294 | 0.68 | 0.922753 |
Target: 5'- cGUGAG---GCUgaUgAACCACGGCCCa -3' miRNA: 3'- -CACUCuagUGAgaGgUUGGUGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 35715 | 0.69 | 0.891239 |
Target: 5'- --uGGAUCGCUUcgCCuuCCAgAGCCCc -3' miRNA: 3'- cacUCUAGUGAGa-GGuuGGUgUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 89457 | 0.69 | 0.884197 |
Target: 5'- ------aCACUUUCacuUAACCACAGCCCg -3' miRNA: 3'- cacucuaGUGAGAG---GUUGGUGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 110879 | 0.7 | 0.819822 |
Target: 5'- cGUG-GA--ACUCUCguGCUGCGGCCCg -3' miRNA: 3'- -CACuCUagUGAGAGguUGGUGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 108432 | 0.71 | 0.792473 |
Target: 5'- cUGAGAcCGCUCUCgAGCUAgAGgCCg -3' miRNA: 3'- cACUCUaGUGAGAGgUUGGUgUCgGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 99877 | 0.72 | 0.753905 |
Target: 5'- uUGAGAgUCGCUgggcaccuagcCUCCAuaauuugguGCCACAGCCg -3' miRNA: 3'- cACUCU-AGUGA-----------GAGGU---------UGGUGUCGGg -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 134263 | 1.13 | 0.002694 |
Target: 5'- gGUGAGAUCACUCUCCAACCACAGCCCa -3' miRNA: 3'- -CACUCUAGUGAGAGGUUGGUGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 69355 | 0.67 | 0.947514 |
Target: 5'- uUGAccugcgugCGCUCUCCGGCUGCugcuuuuAGCCCg -3' miRNA: 3'- cACUcua-----GUGAGAGGUUGGUG-------UCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 131654 | 0.67 | 0.943419 |
Target: 5'- aGUGAGAgcugCAgUCcccugcagCCGGCCAgGGCCa -3' miRNA: 3'- -CACUCUa---GUgAGa-------GGUUGGUgUCGGg -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 87031 | 0.67 | 0.933593 |
Target: 5'- aGUGAGGUCAauaaUCUCCAcuuCgAgGGCaCCa -3' miRNA: 3'- -CACUCUAGUg---AGAGGUu--GgUgUCG-GG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 42011 | 0.67 | 0.933593 |
Target: 5'- -cGAGAccaGCUCUCCGuGCCACc-CCCa -3' miRNA: 3'- caCUCUag-UGAGAGGU-UGGUGucGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 113107 | 0.66 | 0.961552 |
Target: 5'- -cGAGggCAC-CUCCAggaggggacgacgcgGCaACGGCCCa -3' miRNA: 3'- caCUCuaGUGaGAGGU---------------UGgUGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 71495 | 0.67 | 0.933593 |
Target: 5'- uGUGAGAaUACUgUCCAG--GCAGCCa -3' miRNA: 3'- -CACUCUaGUGAgAGGUUggUGUCGGg -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 51463 | 0.67 | 0.938633 |
Target: 5'- -cGAGAUCAUcuUUUCCAcCUACA-CCCg -3' miRNA: 3'- caCUCUAGUG--AGAGGUuGGUGUcGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 85098 | 0.66 | 0.967008 |
Target: 5'- -aGGGuUCGgUCUuuGGCCugGGUCCa -3' miRNA: 3'- caCUCuAGUgAGAggUUGGugUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 81392 | 0.67 | 0.933593 |
Target: 5'- ----cAUCACUCcCCgGGCCACAGCgCCg -3' miRNA: 3'- cacucUAGUGAGaGG-UUGGUGUCG-GG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 9709 | 0.68 | 0.910899 |
Target: 5'- -cGAGAUCACgg-CCAccuUCACGGCUCc -3' miRNA: 3'- caCUCUAGUGagaGGUu--GGUGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 100712 | 0.67 | 0.945264 |
Target: 5'- cGUGAccaaGGUCAC-CUCCG-CCAUgaagggaguuggguuGGCCCg -3' miRNA: 3'- -CACU----CUAGUGaGAGGUuGGUG---------------UCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 64923 | 0.73 | 0.682406 |
Target: 5'- -aGAGGUCAgaCUCUAcACUGCAGCCUg -3' miRNA: 3'- caCUCUAGUgaGAGGU-UGGUGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 60316 | 0.73 | 0.682406 |
Target: 5'- aGUGGcAUCagauugGCUCUCCcGCCGCAGCgCCg -3' miRNA: 3'- -CACUcUAG------UGAGAGGuUGGUGUCG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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