Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13468 | 3' | -53 | NC_003409.1 | + | 72237 | 0.67 | 0.947956 |
Target: 5'- -aGAGuuuUgACUCUCCAAuacccCCACAcggcGCCCc -3' miRNA: 3'- caCUCu--AgUGAGAGGUU-----GGUGU----CGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 71333 | 0.67 | 0.947956 |
Target: 5'- -aGAGGUCugUUUCCGGagCGCGGacaCCCg -3' miRNA: 3'- caCUCUAGugAGAGGUUg-GUGUC---GGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 100712 | 0.67 | 0.945264 |
Target: 5'- cGUGAccaaGGUCAC-CUCCG-CCAUgaagggaguuggguuGGCCCg -3' miRNA: 3'- -CACU----CUAGUGaGAGGUuGGUG---------------UCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 107881 | 0.67 | 0.928301 |
Target: 5'- -cGGccagCGCUCgcaCCAGCgGCAGCCCu -3' miRNA: 3'- caCUcua-GUGAGa--GGUUGgUGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 67236 | 0.68 | 0.925003 |
Target: 5'- -gGGGAUUACUgUCCAuuACCAgguaacgagcgucgaUGGCCCu -3' miRNA: 3'- caCUCUAGUGAgAGGU--UGGU---------------GUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 55189 | 0.68 | 0.922754 |
Target: 5'- -cGGGGUCACacaggCCAuCUACAGCCUc -3' miRNA: 3'- caCUCUAGUGaga--GGUuGGUGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 66262 | 0.68 | 0.904593 |
Target: 5'- cUGuGAUauaGgUC-CCAACCACAGCCa -3' miRNA: 3'- cACuCUAg--UgAGaGGUUGGUGUCGGg -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 33498 | 0.68 | 0.89737 |
Target: 5'- -cGAGAUCcacuggcGCUgCUCCAGgCgagaACAGCCCu -3' miRNA: 3'- caCUCUAG-------UGA-GAGGUUgG----UGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 60316 | 0.73 | 0.682406 |
Target: 5'- aGUGGcAUCagauugGCUCUCCcGCCGCAGCgCCg -3' miRNA: 3'- -CACUcUAG------UGAGAGGuUGGUGUCG-GG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 64923 | 0.73 | 0.682406 |
Target: 5'- -aGAGGUCAgaCUCUAcACUGCAGCCUg -3' miRNA: 3'- caCUCUAGUgaGAGGU-UGGUGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 53088 | 0.66 | 0.967008 |
Target: 5'- ---uGAUCAuUUCUCCGuuaauucCCACAGCCa -3' miRNA: 3'- cacuCUAGU-GAGAGGUu------GGUGUCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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