Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13468 | 3' | -53 | NC_003409.1 | + | 131654 | 0.67 | 0.943419 |
Target: 5'- aGUGAGAgcugCAgUCcccugcagCCGGCCAgGGCCa -3' miRNA: 3'- -CACUCUa---GUgAGa-------GGUUGGUgUCGGg -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 100712 | 0.67 | 0.945264 |
Target: 5'- cGUGAccaaGGUCAC-CUCCG-CCAUgaagggaguuggguuGGCCCg -3' miRNA: 3'- -CACU----CUAGUGaGAGGUuGGUG---------------UCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 69355 | 0.67 | 0.947514 |
Target: 5'- uUGAccugcgugCGCUCUCCGGCUGCugcuuuuAGCCCg -3' miRNA: 3'- cACUcua-----GUGAGAGGUUGGUG-------UCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 57914 | 0.67 | 0.947956 |
Target: 5'- -----uUCACcacCUCCucgcACCGCAGCCCa -3' miRNA: 3'- cacucuAGUGa--GAGGu---UGGUGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 71333 | 0.67 | 0.947956 |
Target: 5'- -aGAGGUCugUUUCCGGagCGCGGacaCCCg -3' miRNA: 3'- caCUCUAGugAGAGGUUg-GUGUC---GGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 72237 | 0.67 | 0.947956 |
Target: 5'- -aGAGuuuUgACUCUCCAAuacccCCACAcggcGCCCc -3' miRNA: 3'- caCUCu--AgUGAGAGGUU-----GGUGU----CGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 35997 | 0.66 | 0.955102 |
Target: 5'- uUGGGGUC-CUCUUgAgucccugcagauccGCC-CAGCCCa -3' miRNA: 3'- cACUCUAGuGAGAGgU--------------UGGuGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 54979 | 0.66 | 0.956291 |
Target: 5'- -gGAGAUUACUaaagUCUGGCCGCAagGCCg -3' miRNA: 3'- caCUCUAGUGAg---AGGUUGGUGU--CGGg -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 113107 | 0.66 | 0.961552 |
Target: 5'- -cGAGggCAC-CUCCAggaggggacgacgcgGCaACGGCCCa -3' miRNA: 3'- caCUCuaGUGaGAGGU---------------UGgUGUCGGG- -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 53088 | 0.66 | 0.967008 |
Target: 5'- ---uGAUCAuUUCUCCGuuaauucCCACAGCCa -3' miRNA: 3'- cacuCUAGU-GAGAGGUu------GGUGUCGGg -5' |
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13468 | 3' | -53 | NC_003409.1 | + | 85098 | 0.66 | 0.967008 |
Target: 5'- -aGGGuUCGgUCUuuGGCCugGGUCCa -3' miRNA: 3'- caCUCuAGUgAGAggUUGGugUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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