miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13468 3' -53 NC_003409.1 + 134263 1.13 0.002694
Target:  5'- gGUGAGAUCACUCUCCAACCACAGCCCa -3'
miRNA:   3'- -CACUCUAGUGAGAGGUUGGUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 60316 0.73 0.682406
Target:  5'- aGUGGcAUCagauugGCUCUCCcGCCGCAGCgCCg -3'
miRNA:   3'- -CACUcUAG------UGAGAGGuUGGUGUCG-GG- -5'
13468 3' -53 NC_003409.1 + 64923 0.73 0.682406
Target:  5'- -aGAGGUCAgaCUCUAcACUGCAGCCUg -3'
miRNA:   3'- caCUCUAGUgaGAGGU-UGGUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 99877 0.72 0.753905
Target:  5'- uUGAGAgUCGCUgggcaccuagcCUCCAuaauuugguGCCACAGCCg -3'
miRNA:   3'- cACUCU-AGUGA-----------GAGGU---------UGGUGUCGGg -5'
13468 3' -53 NC_003409.1 + 108432 0.71 0.792473
Target:  5'- cUGAGAcCGCUCUCgAGCUAgAGgCCg -3'
miRNA:   3'- cACUCUaGUGAGAGgUUGGUgUCgGG- -5'
13468 3' -53 NC_003409.1 + 110879 0.7 0.819822
Target:  5'- cGUG-GA--ACUCUCguGCUGCGGCCCg -3'
miRNA:   3'- -CACuCUagUGAGAGguUGGUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 89457 0.69 0.884197
Target:  5'- ------aCACUUUCacuUAACCACAGCCCg -3'
miRNA:   3'- cacucuaGUGAGAG---GUUGGUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 35715 0.69 0.891239
Target:  5'- --uGGAUCGCUUcgCCuuCCAgAGCCCc -3'
miRNA:   3'- cacUCUAGUGAGa-GGuuGGUgUCGGG- -5'
13468 3' -53 NC_003409.1 + 33498 0.68 0.89737
Target:  5'- -cGAGAUCcacuggcGCUgCUCCAGgCgagaACAGCCCu -3'
miRNA:   3'- caCUCUAG-------UGA-GAGGUUgG----UGUCGGG- -5'
13468 3' -53 NC_003409.1 + 66262 0.68 0.904593
Target:  5'- cUGuGAUauaGgUC-CCAACCACAGCCa -3'
miRNA:   3'- cACuCUAg--UgAGaGGUUGGUGUCGGg -5'
13468 3' -53 NC_003409.1 + 9709 0.68 0.910899
Target:  5'- -cGAGAUCACgg-CCAccuUCACGGCUCc -3'
miRNA:   3'- caCUCUAGUGagaGGUu--GGUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 34294 0.68 0.922753
Target:  5'- cGUGAG---GCUgaUgAACCACGGCCCa -3'
miRNA:   3'- -CACUCuagUGAgaGgUUGGUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 55189 0.68 0.922754
Target:  5'- -cGGGGUCACacaggCCAuCUACAGCCUc -3'
miRNA:   3'- caCUCUAGUGaga--GGUuGGUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 67236 0.68 0.925003
Target:  5'- -gGGGAUUACUgUCCAuuACCAgguaacgagcgucgaUGGCCCu -3'
miRNA:   3'- caCUCUAGUGAgAGGU--UGGU---------------GUCGGG- -5'
13468 3' -53 NC_003409.1 + 107881 0.67 0.928301
Target:  5'- -cGGccagCGCUCgcaCCAGCgGCAGCCCu -3'
miRNA:   3'- caCUcua-GUGAGa--GGUUGgUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 81392 0.67 0.933593
Target:  5'- ----cAUCACUCcCCgGGCCACAGCgCCg -3'
miRNA:   3'- cacucUAGUGAGaGG-UUGGUGUCG-GG- -5'
13468 3' -53 NC_003409.1 + 71495 0.67 0.933593
Target:  5'- uGUGAGAaUACUgUCCAG--GCAGCCa -3'
miRNA:   3'- -CACUCUaGUGAgAGGUUggUGUCGGg -5'
13468 3' -53 NC_003409.1 + 42011 0.67 0.933593
Target:  5'- -cGAGAccaGCUCUCCGuGCCACc-CCCa -3'
miRNA:   3'- caCUCUag-UGAGAGGU-UGGUGucGGG- -5'
13468 3' -53 NC_003409.1 + 87031 0.67 0.933593
Target:  5'- aGUGAGGUCAauaaUCUCCAcuuCgAgGGCaCCa -3'
miRNA:   3'- -CACUCUAGUg---AGAGGUu--GgUgUCG-GG- -5'
13468 3' -53 NC_003409.1 + 51463 0.67 0.938633
Target:  5'- -cGAGAUCAUcuUUUCCAcCUACA-CCCg -3'
miRNA:   3'- caCUCUAGUG--AGAGGUuGGUGUcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.