miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13468 3' -53 NC_003409.1 + 134263 1.13 0.002694
Target:  5'- gGUGAGAUCACUCUCCAACCACAGCCCa -3'
miRNA:   3'- -CACUCUAGUGAGAGGUUGGUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 131654 0.67 0.943419
Target:  5'- aGUGAGAgcugCAgUCcccugcagCCGGCCAgGGCCa -3'
miRNA:   3'- -CACUCUa---GUgAGa-------GGUUGGUgUCGGg -5'
13468 3' -53 NC_003409.1 + 113107 0.66 0.961552
Target:  5'- -cGAGggCAC-CUCCAggaggggacgacgcgGCaACGGCCCa -3'
miRNA:   3'- caCUCuaGUGaGAGGU---------------UGgUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 110879 0.7 0.819822
Target:  5'- cGUG-GA--ACUCUCguGCUGCGGCCCg -3'
miRNA:   3'- -CACuCUagUGAGAGguUGGUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 108432 0.71 0.792473
Target:  5'- cUGAGAcCGCUCUCgAGCUAgAGgCCg -3'
miRNA:   3'- cACUCUaGUGAGAGgUUGGUgUCgGG- -5'
13468 3' -53 NC_003409.1 + 107881 0.67 0.928301
Target:  5'- -cGGccagCGCUCgcaCCAGCgGCAGCCCu -3'
miRNA:   3'- caCUcua-GUGAGa--GGUUGgUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 100712 0.67 0.945264
Target:  5'- cGUGAccaaGGUCAC-CUCCG-CCAUgaagggaguuggguuGGCCCg -3'
miRNA:   3'- -CACU----CUAGUGaGAGGUuGGUG---------------UCGGG- -5'
13468 3' -53 NC_003409.1 + 99877 0.72 0.753905
Target:  5'- uUGAGAgUCGCUgggcaccuagcCUCCAuaauuugguGCCACAGCCg -3'
miRNA:   3'- cACUCU-AGUGA-----------GAGGU---------UGGUGUCGGg -5'
13468 3' -53 NC_003409.1 + 89457 0.69 0.884197
Target:  5'- ------aCACUUUCacuUAACCACAGCCCg -3'
miRNA:   3'- cacucuaGUGAGAG---GUUGGUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 87031 0.67 0.933593
Target:  5'- aGUGAGGUCAauaaUCUCCAcuuCgAgGGCaCCa -3'
miRNA:   3'- -CACUCUAGUg---AGAGGUu--GgUgUCG-GG- -5'
13468 3' -53 NC_003409.1 + 85098 0.66 0.967008
Target:  5'- -aGGGuUCGgUCUuuGGCCugGGUCCa -3'
miRNA:   3'- caCUCuAGUgAGAggUUGGugUCGGG- -5'
13468 3' -53 NC_003409.1 + 81392 0.67 0.933593
Target:  5'- ----cAUCACUCcCCgGGCCACAGCgCCg -3'
miRNA:   3'- cacucUAGUGAGaGG-UUGGUGUCG-GG- -5'
13468 3' -53 NC_003409.1 + 72237 0.67 0.947956
Target:  5'- -aGAGuuuUgACUCUCCAAuacccCCACAcggcGCCCc -3'
miRNA:   3'- caCUCu--AgUGAGAGGUU-----GGUGU----CGGG- -5'
13468 3' -53 NC_003409.1 + 71495 0.67 0.933593
Target:  5'- uGUGAGAaUACUgUCCAG--GCAGCCa -3'
miRNA:   3'- -CACUCUaGUGAgAGGUUggUGUCGGg -5'
13468 3' -53 NC_003409.1 + 71333 0.67 0.947956
Target:  5'- -aGAGGUCugUUUCCGGagCGCGGacaCCCg -3'
miRNA:   3'- caCUCUAGugAGAGGUUg-GUGUC---GGG- -5'
13468 3' -53 NC_003409.1 + 69355 0.67 0.947514
Target:  5'- uUGAccugcgugCGCUCUCCGGCUGCugcuuuuAGCCCg -3'
miRNA:   3'- cACUcua-----GUGAGAGGUUGGUG-------UCGGG- -5'
13468 3' -53 NC_003409.1 + 67236 0.68 0.925003
Target:  5'- -gGGGAUUACUgUCCAuuACCAgguaacgagcgucgaUGGCCCu -3'
miRNA:   3'- caCUCUAGUGAgAGGU--UGGU---------------GUCGGG- -5'
13468 3' -53 NC_003409.1 + 66262 0.68 0.904593
Target:  5'- cUGuGAUauaGgUC-CCAACCACAGCCa -3'
miRNA:   3'- cACuCUAg--UgAGaGGUUGGUGUCGGg -5'
13468 3' -53 NC_003409.1 + 64923 0.73 0.682406
Target:  5'- -aGAGGUCAgaCUCUAcACUGCAGCCUg -3'
miRNA:   3'- caCUCUAGUgaGAGGU-UGGUGUCGGG- -5'
13468 3' -53 NC_003409.1 + 60316 0.73 0.682406
Target:  5'- aGUGGcAUCagauugGCUCUCCcGCCGCAGCgCCg -3'
miRNA:   3'- -CACUcUAG------UGAGAGGuUGGUGUCG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.