miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1362 5' -59.6 NC_001335.1 + 19365 1.1 0.000313
Target:  5'- cCCAGCAGCGCGACCACGGCCUCGUGAg -3'
miRNA:   3'- -GGUCGUCGCGCUGGUGCCGGAGCACU- -5'
1362 5' -59.6 NC_001335.1 + 16424 0.76 0.113237
Target:  5'- aCCuGCAGaaCGUGGCCucgGGCCUCGUGAa -3'
miRNA:   3'- -GGuCGUC--GCGCUGGug-CCGGAGCACU- -5'
1362 5' -59.6 NC_001335.1 + 45031 0.71 0.243352
Target:  5'- cCCAGUGGgaGaCGGCCACGGCgUCGggGAa -3'
miRNA:   3'- -GGUCGUCg-C-GCUGGUGCCGgAGCa-CU- -5'
1362 5' -59.6 NC_001335.1 + 24128 0.71 0.24954
Target:  5'- gCGGCGGUGCuGGCgcuCGCGGCCaggCGUGGu -3'
miRNA:   3'- gGUCGUCGCG-CUG---GUGCCGGa--GCACU- -5'
1362 5' -59.6 NC_001335.1 + 16623 0.71 0.255858
Target:  5'- gCCGGUAGCGagcacagGGCCGaGGCC-CGUGAa -3'
miRNA:   3'- -GGUCGUCGCg------CUGGUgCCGGaGCACU- -5'
1362 5' -59.6 NC_001335.1 + 41418 0.69 0.318694
Target:  5'- gCCGGggcCGGCGCaGACCAggacuagcUGGCCUCGUcGGa -3'
miRNA:   3'- -GGUC---GUCGCG-CUGGU--------GCCGGAGCA-CU- -5'
1362 5' -59.6 NC_001335.1 + 27291 0.69 0.34207
Target:  5'- cUCGGCgagguuggccucGGCGCGGUCACgGGCCUCGUc- -3'
miRNA:   3'- -GGUCG------------UCGCGCUGGUG-CCGGAGCAcu -5'
1362 5' -59.6 NC_001335.1 + 18615 0.68 0.350132
Target:  5'- gCCAGgAGCGCGGCCcCuGCUUCGcgucguUGAg -3'
miRNA:   3'- -GGUCgUCGCGCUGGuGcCGGAGC------ACU- -5'
1362 5' -59.6 NC_001335.1 + 49570 0.68 0.350132
Target:  5'- gCCGucCAGCGCGGCCAUccaGGUCUCGa-- -3'
miRNA:   3'- -GGUc-GUCGCGCUGGUG---CCGGAGCacu -5'
1362 5' -59.6 NC_001335.1 + 31655 0.68 0.358328
Target:  5'- gCCAGCucacggaucucGGCau--CCGCGGCCUCGUGc -3'
miRNA:   3'- -GGUCG-----------UCGcgcuGGUGCCGGAGCACu -5'
1362 5' -59.6 NC_001335.1 + 14062 0.68 0.366658
Target:  5'- aCCGGCAGCGUGugCAgcguCGGugcguugggguuCCUCGUc- -3'
miRNA:   3'- -GGUCGUCGCGCugGU----GCC------------GGAGCAcu -5'
1362 5' -59.6 NC_001335.1 + 12618 0.68 0.366658
Target:  5'- uUCGGCGGuCGCGuagGCCACGGguuacuCCUCGUu- -3'
miRNA:   3'- -GGUCGUC-GCGC---UGGUGCC------GGAGCAcu -5'
1362 5' -59.6 NC_001335.1 + 35671 0.68 0.392437
Target:  5'- aCAuCAuCGCGAUCACGGCUggCGUGGa -3'
miRNA:   3'- gGUcGUcGCGCUGGUGCCGGa-GCACU- -5'
1362 5' -59.6 NC_001335.1 + 47454 0.67 0.401288
Target:  5'- gCCAGCAGUGCauuGGCCACaGCUccgaUGUGGc -3'
miRNA:   3'- -GGUCGUCGCG---CUGGUGcCGGa---GCACU- -5'
1362 5' -59.6 NC_001335.1 + 22594 0.67 0.419365
Target:  5'- gCUGGCGGCGUGGCCGgCGGUgaCGa-- -3'
miRNA:   3'- -GGUCGUCGCGCUGGU-GCCGgaGCacu -5'
1362 5' -59.6 NC_001335.1 + 32923 0.67 0.419365
Target:  5'- gUCGGCGaCgGUGACgACGGCCUCGg-- -3'
miRNA:   3'- -GGUCGUcG-CGCUGgUGCCGGAGCacu -5'
1362 5' -59.6 NC_001335.1 + 23025 0.67 0.419365
Target:  5'- gCGGUAGC-CGAUCugGGCCUuCGa-- -3'
miRNA:   3'- gGUCGUCGcGCUGGugCCGGA-GCacu -5'
1362 5' -59.6 NC_001335.1 + 15315 0.67 0.428588
Target:  5'- -aGGCGGCGaucaGcuuCUugGGCUUCGUGGc -3'
miRNA:   3'- ggUCGUCGCg---Cu--GGugCCGGAGCACU- -5'
1362 5' -59.6 NC_001335.1 + 49167 0.67 0.447385
Target:  5'- cUCAGUAGuCGCuGugCugGGUCUCGa-- -3'
miRNA:   3'- -GGUCGUC-GCG-CugGugCCGGAGCacu -5'
1362 5' -59.6 NC_001335.1 + 10490 0.67 0.447385
Target:  5'- uCCAGaGGU-CGAUCACGGUCUCGUc- -3'
miRNA:   3'- -GGUCgUCGcGCUGGUGCCGGAGCAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.