Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1362 | 5' | -59.6 | NC_001335.1 | + | 10490 | 0.67 | 0.447385 |
Target: 5'- uCCAGaGGU-CGAUCACGGUCUCGUc- -3' miRNA: 3'- -GGUCgUCGcGCUGGUGCCGGAGCAcu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 12618 | 0.68 | 0.366658 |
Target: 5'- uUCGGCGGuCGCGuagGCCACGGguuacuCCUCGUu- -3' miRNA: 3'- -GGUCGUC-GCGC---UGGUGCC------GGAGCAcu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 14062 | 0.68 | 0.366658 |
Target: 5'- aCCGGCAGCGUGugCAgcguCGGugcguugggguuCCUCGUc- -3' miRNA: 3'- -GGUCGUCGCGCugGU----GCC------------GGAGCAcu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 15315 | 0.67 | 0.428588 |
Target: 5'- -aGGCGGCGaucaGcuuCUugGGCUUCGUGGc -3' miRNA: 3'- ggUCGUCGCg---Cu--GGugCCGGAGCACU- -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 16424 | 0.76 | 0.113237 |
Target: 5'- aCCuGCAGaaCGUGGCCucgGGCCUCGUGAa -3' miRNA: 3'- -GGuCGUC--GCGCUGGug-CCGGAGCACU- -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 16623 | 0.71 | 0.255858 |
Target: 5'- gCCGGUAGCGagcacagGGCCGaGGCC-CGUGAa -3' miRNA: 3'- -GGUCGUCGCg------CUGGUgCCGGaGCACU- -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 18615 | 0.68 | 0.350132 |
Target: 5'- gCCAGgAGCGCGGCCcCuGCUUCGcgucguUGAg -3' miRNA: 3'- -GGUCgUCGCGCUGGuGcCGGAGC------ACU- -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 19365 | 1.1 | 0.000313 |
Target: 5'- cCCAGCAGCGCGACCACGGCCUCGUGAg -3' miRNA: 3'- -GGUCGUCGCGCUGGUGCCGGAGCACU- -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 22594 | 0.67 | 0.419365 |
Target: 5'- gCUGGCGGCGUGGCCGgCGGUgaCGa-- -3' miRNA: 3'- -GGUCGUCGCGCUGGU-GCCGgaGCacu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 23025 | 0.67 | 0.419365 |
Target: 5'- gCGGUAGC-CGAUCugGGCCUuCGa-- -3' miRNA: 3'- gGUCGUCGcGCUGGugCCGGA-GCacu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 24128 | 0.71 | 0.24954 |
Target: 5'- gCGGCGGUGCuGGCgcuCGCGGCCaggCGUGGu -3' miRNA: 3'- gGUCGUCGCG-CUG---GUGCCGGa--GCACU- -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 27291 | 0.69 | 0.34207 |
Target: 5'- cUCGGCgagguuggccucGGCGCGGUCACgGGCCUCGUc- -3' miRNA: 3'- -GGUCG------------UCGCGCUGGUG-CCGGAGCAcu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 31655 | 0.68 | 0.358328 |
Target: 5'- gCCAGCucacggaucucGGCau--CCGCGGCCUCGUGc -3' miRNA: 3'- -GGUCG-----------UCGcgcuGGUGCCGGAGCACu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 32513 | 0.66 | 0.476413 |
Target: 5'- aUCAGCAGUGUGACgCGCaauGGCC-CGa-- -3' miRNA: 3'- -GGUCGUCGCGCUG-GUG---CCGGaGCacu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 32919 | 0.66 | 0.476413 |
Target: 5'- -gGGCGGUGCu-CCACGGUCgUCGUa- -3' miRNA: 3'- ggUCGUCGCGcuGGUGCCGG-AGCAcu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 32923 | 0.67 | 0.419365 |
Target: 5'- gUCGGCGaCgGUGACgACGGCCUCGg-- -3' miRNA: 3'- -GGUCGUcG-CGCUGgUGCCGGAGCacu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 33131 | 0.66 | 0.496275 |
Target: 5'- aUCGGCuGCGacauCCuCGGCCUCGUa- -3' miRNA: 3'- -GGUCGuCGCgcu-GGuGCCGGAGCAcu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 34335 | 0.66 | 0.456953 |
Target: 5'- aCGGCAGCG-GGCCGCuGGCCa----- -3' miRNA: 3'- gGUCGUCGCgCUGGUG-CCGGagcacu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 35671 | 0.68 | 0.392437 |
Target: 5'- aCAuCAuCGCGAUCACGGCUggCGUGGa -3' miRNA: 3'- gGUcGUcGCGCUGGUGCCGGa-GCACU- -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 41418 | 0.69 | 0.318694 |
Target: 5'- gCCGGggcCGGCGCaGACCAggacuagcUGGCCUCGUcGGa -3' miRNA: 3'- -GGUC---GUCGCG-CUGGU--------GCCGGAGCA-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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