Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1362 | 5' | -59.6 | NC_001335.1 | + | 45031 | 0.71 | 0.243352 |
Target: 5'- cCCAGUGGgaGaCGGCCACGGCgUCGggGAa -3' miRNA: 3'- -GGUCGUCg-C-GCUGGUGCCGgAGCa-CU- -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 46415 | 0.66 | 0.476413 |
Target: 5'- cCCGcCGGC-CGAuuCCACGGCCUUGUu- -3' miRNA: 3'- -GGUcGUCGcGCU--GGUGCCGGAGCAcu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 47454 | 0.67 | 0.401288 |
Target: 5'- gCCAGCAGUGCauuGGCCACaGCUccgaUGUGGc -3' miRNA: 3'- -GGUCGUCGCG---CUGGUGcCGGa---GCACU- -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 48476 | 0.66 | 0.486296 |
Target: 5'- uCCAGU-GUGCGA--ACGGCCUUGUa- -3' miRNA: 3'- -GGUCGuCGCGCUggUGCCGGAGCAcu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 49009 | 0.67 | 0.447385 |
Target: 5'- gCCAGCGuUGUGACgagccggucgaUGCGGuCCUCGUGGa -3' miRNA: 3'- -GGUCGUcGCGCUG-----------GUGCC-GGAGCACU- -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 49167 | 0.67 | 0.447385 |
Target: 5'- cUCAGUAGuCGCuGugCugGGUCUCGa-- -3' miRNA: 3'- -GGUCGUC-GCG-CugGugCCGGAGCacu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 49570 | 0.68 | 0.350132 |
Target: 5'- gCCGucCAGCGCGGCCAUccaGGUCUCGa-- -3' miRNA: 3'- -GGUc-GUCGCGCUGGUG---CCGGAGCacu -5' |
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1362 | 5' | -59.6 | NC_001335.1 | + | 52127 | 0.66 | 0.506346 |
Target: 5'- gCUAGCcGCGUG-CCGCGGCgCUCu--- -3' miRNA: 3'- -GGUCGuCGCGCuGGUGCCG-GAGcacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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