Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1362 | 5' | -59.6 | NC_001335.1 | + | 35671 | 0.68 | 0.392437 |
Target: 5'- aCAuCAuCGCGAUCACGGCUggCGUGGa -3' miRNA: 3'- gGUcGUcGCGCUGGUGCCGGa-GCACU- -5' |
|||||||
1362 | 5' | -59.6 | NC_001335.1 | + | 14062 | 0.68 | 0.366658 |
Target: 5'- aCCGGCAGCGUGugCAgcguCGGugcguugggguuCCUCGUc- -3' miRNA: 3'- -GGUCGUCGCGCugGU----GCC------------GGAGCAcu -5' |
|||||||
1362 | 5' | -59.6 | NC_001335.1 | + | 12618 | 0.68 | 0.366658 |
Target: 5'- uUCGGCGGuCGCGuagGCCACGGguuacuCCUCGUu- -3' miRNA: 3'- -GGUCGUC-GCGC---UGGUGCC------GGAGCAcu -5' |
|||||||
1362 | 5' | -59.6 | NC_001335.1 | + | 18615 | 0.68 | 0.350132 |
Target: 5'- gCCAGgAGCGCGGCCcCuGCUUCGcgucguUGAg -3' miRNA: 3'- -GGUCgUCGCGCUGGuGcCGGAGC------ACU- -5' |
|||||||
1362 | 5' | -59.6 | NC_001335.1 | + | 16623 | 0.71 | 0.255858 |
Target: 5'- gCCGGUAGCGagcacagGGCCGaGGCC-CGUGAa -3' miRNA: 3'- -GGUCGUCGCg------CUGGUgCCGGaGCACU- -5' |
|||||||
1362 | 5' | -59.6 | NC_001335.1 | + | 45031 | 0.71 | 0.243352 |
Target: 5'- cCCAGUGGgaGaCGGCCACGGCgUCGggGAa -3' miRNA: 3'- -GGUCGUCg-C-GCUGGUGCCGgAGCa-CU- -5' |
|||||||
1362 | 5' | -59.6 | NC_001335.1 | + | 19365 | 1.1 | 0.000313 |
Target: 5'- cCCAGCAGCGCGACCACGGCCUCGUGAg -3' miRNA: 3'- -GGUCGUCGCGCUGGUGCCGGAGCACU- -5' |
|||||||
1362 | 5' | -59.6 | NC_001335.1 | + | 32513 | 0.66 | 0.476413 |
Target: 5'- aUCAGCAGUGUGACgCGCaauGGCC-CGa-- -3' miRNA: 3'- -GGUCGUCGCGCUG-GUG---CCGGaGCacu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home