miRNA display CGI


Results 21 - 29 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1363 5' -62 NC_001335.1 + 32664 0.68 0.266449
Target:  5'- gGCCAGcagcagucucgcGCCcCGCAGGCagcucaGGAAG-CGCCu -3'
miRNA:   3'- -UGGUC------------CGGcGCGUCCG------CCUUCaGCGG- -5'
1363 5' -62 NC_001335.1 + 12185 0.69 0.247412
Target:  5'- gACCuGGCCccagacgaGCuGGCGGAAGUCaCCc -3'
miRNA:   3'- -UGGuCCGGcg------CGuCCGCCUUCAGcGG- -5'
1363 5' -62 NC_001335.1 + 5957 0.69 0.241321
Target:  5'- gACCAGGCCcgaGCGGGuCGGGcuGGccugUGCCg -3'
miRNA:   3'- -UGGUCCGGcg-CGUCC-GCCU--UCa---GCGG- -5'
1363 5' -62 NC_001335.1 + 15490 0.69 0.237727
Target:  5'- -aCAGGUCGCGCAGGUcuacccgguaguacuGGAgcaggucugcgaGGaUCGCCc -3'
miRNA:   3'- ugGUCCGGCGCGUCCG---------------CCU------------UC-AGCGG- -5'
1363 5' -62 NC_001335.1 + 612 0.7 0.197
Target:  5'- uCCAGGCCGCGagaUAGGCcggcacGAAGUCggucgGCCg -3'
miRNA:   3'- uGGUCCGGCGC---GUCCGc-----CUUCAG-----CGG- -5'
1363 5' -62 NC_001335.1 + 453 0.71 0.167259
Target:  5'- cACCccucuauaGGGCCGCGCAcuGGCGcGGccuugagauccggcGGUUGCCg -3'
miRNA:   3'- -UGG--------UCCGGCGCGU--CCGC-CU--------------UCAGCGG- -5'
1363 5' -62 NC_001335.1 + 1701 0.71 0.167259
Target:  5'- aACCAGGCguccucgaggagggCGCGUucGGuCGGGGuGUCGCCa -3'
miRNA:   3'- -UGGUCCG--------------GCGCGu-CC-GCCUU-CAGCGG- -5'
1363 5' -62 NC_001335.1 + 46197 0.75 0.093134
Target:  5'- uACCGGaGCgcaGCGCAcaucgccgagcacGGCGGAaaAGUCGCCg -3'
miRNA:   3'- -UGGUC-CGg--CGCGU-------------CCGCCU--UCAGCGG- -5'
1363 5' -62 NC_001335.1 + 25268 0.66 0.370939
Target:  5'- aGCCuGGCU-CGCGGGCGaGAAG-CGgCu -3'
miRNA:   3'- -UGGuCCGGcGCGUCCGC-CUUCaGCgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.